PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3057_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 332aa    MW: 36792.2 Da    PI: 8.3585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3057_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012527123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C+k F++  +L  Hir H
  RrC3057_p2  5 HVCKFCNKKFPSGKSLGGHIRIH 27
                79*******************99 PP
2zf-C2H211.60.00087280302123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C ++F++   L  H r+H
  RrC3057_p2 280 HECPVCFRVFKSGQALGGHKRSH 302
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-6229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.48E-8327No hitNo description
PROSITE profilePS5015710.99532IPR007087Zinc finger, C2H2
SMARTSM003550.01527IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-6523IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576673.48E-8275302No hitNo description
PfamPF139124.2E-11279302IPR007087Zinc finger, C2H2
SMARTSM003550.17280302IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995280302IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEKKHVCKFC NKKFPSGKSL GGHIRIHTND YSVASVSFNA KNPTKNNKRL VDQREIEQQL  60
CCRGCGGINH MDCHCVGEKM VMHSRSDAET TRSKKVMKQS ESFSSSSASE IDQEHKDTAL  120
SLMMMSIDSK GRNLVVNSLA ESSSENTSEI LETKSSSGEQ LKMIFDQDLN TDKVAADDQL  180
RPPDDSYSSD SDYFMNGPKK SDSDVSVEGS LRNTNRFKNG DDLGVKEGGS KYELRKSKRV  240
MPCYESDSCV DTNNKIHRSS DSKSPMVKKA SGANKSSKVH ECPVCFRVFK SGQALGGHKR  300
SHFIGNHGHR IKHKAAADMP IDLNLPAQDI DE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437508.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A3P6EXW01e-166A0A3P6EXW0_BRAOL; Uncharacterized protein
STRINGBo7g054100.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.12e-82C2H2-like zinc finger protein