PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3039_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 390aa MW: 44565.5 Da PI: 8.2181

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3039_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.5e-11	224	274	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h +Er+RR+++N ++ Lr+l+P++ + + + a+i+ A++++k L RrC3039_p2 224 QRMTHITVERNRRRQMNVYLNSLRSLIPSS---YILRGDQASIVGGAIDFVKIL 274 79**************************...9*************99866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.14E-14	216	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.14E-10	222	279	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-11	222	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.037	223	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	224	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-9	229	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
VKTQTNGSSH LHHHLLSINQ SPHNCLSSLP DKTATANNVV LRDLSSRERE IQTRVCDNRG 60 GFSDLFMEKI QGQNKLCSLN QKVIVRRSLE VQGSGEDQRF ELEEEDQFLQ KMQQSEDLSA 120 AVLPFKDPNF LALLSLQTLE KPPWGLGNYL PHEVPELSHS PNYYYQNPSL ERINEAMIST 180 QEEIQLNPQR KRRNNNLVAS SVSREKRKRK RTKPAKNTEE MESQRMTHIT VERNRRRQMN 240 VYLNSLRSLI PSSYILRGDQ ASIVGGAIDF VKILEQQLQS LEAQKITQQT DTKDVSLRAC 300 DEEQSSTKLR IDATVIESHV NLKIQCPKKQ GQLLRSIIWL EKLRLTVLHL NVTSPCNASV 360 SYSFNLKMED DCVLGSTDEI TAAVRQIFDC

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

VKTQTNGSSH LHHHLLSINQ SPHNCLSSLP DKTATANNVV LRDLSSRERE IQTRVCDNRG  60
GFSDLFMEKI QGQNKLCSLN QKVIVRRSLE VQGSGEDQRF ELEEEDQFLQ KMQQSEDLSA  120
AVLPFKDPNF LALLSLQTLE KPPWGLGNYL PHEVPELSHS PNYYYQNPSL ERINEAMIST  180
QEEIQLNPQR KRRNNNLVAS SVSREKRKRK RTKPAKNTEE MESQRMTHIT VERNRRRQMN  240
VYLNSLRSLI PSSYILRGDQ ASIVGGAIDF VKILEQQLQS LEAQKITQQT DTKDVSLRAC  300
DEEQSSTKLR IDATVIESHV NLKIQCPKKQ GQLLRSIIWL EKLRLTVLHL NVTSPCNASV  360
SYSFNLKMED DCVLGSTDEI TAAVRQIFDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	210	KRRNNNLVASSVSREKRKRKR
2	206	213	RKRKRTKP
3	224	235	RMTHITVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439014.1	0.0	PREDICTED: transcription factor bHLH70
Swissprot	O81037	1e-137	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A0D3BNQ4	1e-178	A0A0D3BNQ4_BRAOL; Uncharacterized protein
STRING	Bo4g006950.1	1e-178	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-139	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]