PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3037_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 629aa    MW: 68289.3 Da    PI: 5.9486
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3037_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55.1e-32247304260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkgse+prsYY+Ct ++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  RrC3037_p2 247 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPSCPVKKKVERSR-EGHITEIIYKGAHNHSK 304
                 8****************************************.***************85 PP
2WRKY102.52.3e-32446504159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+H+h+
  RrC3037_p2 446 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHDHD 504
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28244305IPR003657WRKY domain
SuperFamilySSF1182905.62E-25245305IPR003657WRKY domain
SMARTSM007741.2E-34246304IPR003657WRKY domain
PfamPF031062.7E-24247302IPR003657WRKY domain
PROSITE profilePS5081123.491247305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-36431506IPR003657WRKY domain
SuperFamilySSF1182903.66E-28438506IPR003657WRKY domain
PROSITE profilePS5081137.677441506IPR003657WRKY domain
SMARTSM007741.6E-36446505IPR003657WRKY domain
PfamPF031063.1E-24447503IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MSGFEENVAV MGEWVPCNPS SKRVLERELS LNHGLVNRLE EEEEDTSGNN KNVSRGGGLR  60
ERIAARAGFN TPRLNTENIR SNTDSSLRSP NCLTISSPGL SPATLLESPV FLSNPLAQPS  120
PTTGKFPFLP GVNSSSNGLS SSSDKAKEEF FDGIGASSFT FHPVSRPSSS FFHGATEMMP  180
VDYGNYNNSS SHHQSPEEDV KLGSEQSGLK RKTSDATTNT NDHQEEEEGE EEQRGGDSMA  240
GGGAPAEDGY NWRKYGQKLV KGSEYPRSYY KCTNPSCPVK KKVERSREGH ITEIIYKGAH  300
NHSKPPPNRR SSGTQLDGTE QQQQQQQQQR DNSATWVSCN NTQQQVGSNE NNFEEDGNQS  360
GSIQAQESGD VIVVDALSTL SNDEDEDDRG TDHGSASLGY DGCGGGDESE SKRRKLEAYA  420
IEMSGATRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTAPGCTVR  480
KHVERASHDL KSVITTYEGK HDHDVPAARN SSHGGGGGGG NGNSAAQTNH YQEPPRGRYE  540
RQLNQSSQFG RPFSFQPHLG PPSGFAFGLG QTGFGNLSIP GLAFGQGKLQ GLSHPSFMMS  600
QQPGGMSEAM MMQRGMEPKV EPGSETGQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36247507878Probable WRKY transcription factor 4
2lex_A2e-36247507878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931670.0KM593167.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY141) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472516.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A078HIW90.0A0A078HIW9_BRANA; BnaA03g10980D protein
STRINGBo3g021100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]