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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC3037_p2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 629aa MW: 68289.3 Da PI: 5.9486 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC3037_p2 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 101.5 | 5.1e-32 | 247 | 304 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK vkgse+prsYY+Ct ++Cpvkkkvers+ +++++ei+Y+g Hnh+k
RrC3037_p2 247 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPSCPVKKKVERSR-EGHITEIIYKGAHNHSK 304
8****************************************.***************85 PP
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2 | WRKY | 102.5 | 2.3e-32 | 446 | 504 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+H+h+
RrC3037_p2 446 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHDHD 504
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 629 aa
Download sequence Send
to blast |
MSGFEENVAV MGEWVPCNPS SKRVLERELS LNHGLVNRLE EEEEDTSGNN KNVSRGGGLR 60 ERIAARAGFN TPRLNTENIR SNTDSSLRSP NCLTISSPGL SPATLLESPV FLSNPLAQPS 120 PTTGKFPFLP GVNSSSNGLS SSSDKAKEEF FDGIGASSFT FHPVSRPSSS FFHGATEMMP 180 VDYGNYNNSS SHHQSPEEDV KLGSEQSGLK RKTSDATTNT NDHQEEEEGE EEQRGGDSMA 240 GGGAPAEDGY NWRKYGQKLV KGSEYPRSYY KCTNPSCPVK KKVERSREGH ITEIIYKGAH 300 NHSKPPPNRR SSGTQLDGTE QQQQQQQQQR DNSATWVSCN NTQQQVGSNE NNFEEDGNQS 360 GSIQAQESGD VIVVDALSTL SNDEDEDDRG TDHGSASLGY DGCGGGDESE SKRRKLEAYA 420 IEMSGATRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTAPGCTVR 480 KHVERASHDL KSVITTYEGK HDHDVPAARN SSHGGGGGGG NGNSAAQTNH YQEPPRGRYE 540 RQLNQSSQFG RPFSFQPHLG PPSGFAFGLG QTGFGNLSIP GLAFGQGKLQ GLSHPSFMMS 600 QQPGGMSEAM MMQRGMEPKV EPGSETGQS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM593167 | 0.0 | KM593167.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY141) mRNA, complete cds. |