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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC3036_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
SRS |
| Protein Properties |
Length: 336aa MW: 37302.9 Da PI: 7.052 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC3036_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 227.5 | 2.5e-70 | 106 | 272 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsalsst 89
r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s++++++k kr ++ ++ +t
RrC3036_p1 106 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSATSRETQNAKAKRLRegnggdnddkdHIGGGGSALAT 204
7899********************************************************999998555555555444578877776667778899999 PP
DUF702 90 klssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
+l++a+s++ le+++ lP+evss+avfrcvrvss++d +e+e+aYqtav+igGhvfkGiLydqG+++
RrC3036_p1 205 RLVNANSNSGLEVNQnLPPEVSSPAVFRCVRVSSIEDdeDEQEYAYQTAVNIGGHVFKGILYDQGPDQ 272
99****9999998766*******************99434456***********************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MAGFFYLGGR DNINNKQDHH QQDKSNYLYL YKDEIYNTNK GFEIWPPQYF QQQQEQQQHH 60
VTASTNLYSF GMVPSSSSNN NTNNRSRSLY FNVVSDHEPG GFTVTRQGGM NCQDCGNQAK 120
KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL ASLQHHSATS RETQNAKAKR 180
LREGNGGDND DKDHIGGGGS ALATRLVNAN SNSGLEVNQN LPPEVSSPAV FRCVRVSSIE 240
DDEDEQEYAY QTAVNIGGHV FKGILYDQGP DQDHHHQLDL LASTATTTNA EEIAAKTAVT 300
VAANNNNGLM MDPSSLYPAQ LNSFIAGTPF FTPPRS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205267 | 0.0 | GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds. |
