PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC302_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 289aa    MW: 31415.8 Da    PI: 6.3403
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC302_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16195231135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  RrC302_p4 195 CTHCGVSStcTPMMRRGPSGPRTLCNACGLFWAARGT 231
                ********************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.966398IPR010399Tify domain
SMARTSM009799.7E-116398IPR010399Tify domain
PfamPF062008.4E-106697IPR010399Tify domain
PROSITE profilePS5101711.568127169IPR010402CCT domain
PfamPF062039.6E-14127168IPR010402CCT domain
SuperFamilySSF577161.95E-12188242No hitNo description
SMARTSM004018.9E-18189242IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.543189250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-15193236IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.30E-16194240No hitNo description
PfamPF003208.3E-14195231IPR000679Zinc finger, GATA-type
PROSITE patternPS003440195222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MFSQHHCQAE INSNQIGSTV GEEDHVFASA AHIPYNDMDE IPNSIYAAAS YLIPNGGSQL  60
LGGSHGANQL TISFRGQVYV FDAVGPQKVD AALSLLGGSA EPQGMEIAQQ NHMPVVEYQN  120
RCSNPQRAQS LDRFRKKRIA RCFDNKVRYG VRQEVALRMP RNKGHFSSGK MTDGAYNSAT  180
DQDSAQDDGR PEISCTHCGV SSTCTPMMRR GPSGPRTLCN ACGLFWAARG TLRDLSKKTE  240
ENQIAIIKSG ELGSDADANN SNYEPEPATV EEHSAFFSLA NEGNMLGNH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0353101e-145AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds.
GenBankAY0860381e-145AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478829.10.0PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH61e-142GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0D3A5Z21e-147A0A0D3A5Z2_BRAOL; Uncharacterized protein
STRINGBo1g039000.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-144GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]