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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC30030_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 271aa MW: 29997.5 Da PI: 6.4458 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.6 | 8.7e-11 | 194 | 237 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + RrC30030_p1 194 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 237 899********************************998777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-13 | 190 | 254 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.588 | 192 | 244 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.77E-11 | 194 | 248 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-13 | 194 | 245 | No hit | No description |
Pfam | PF00170 | 2.1E-9 | 194 | 238 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.44E-25 | 195 | 245 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 197 | 212 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MATTTTPHWP ELSSEKLPSI AATAAATAAT AGQQNPSWMD EFLDFSSTRR GTHRRSISDS 60 IAFLDQPSSG VGSHHFDRFD DEQFMSMFKD DLHQNHHHNN SVNGNVGHTR SSSNTSTPSD 120 QNSLLSGEDN KEQPPSDNDH MDTTTANDNN VAGNNYNESD EVQSHCCKTE PQDGPSSTNQ 180 DSGKSSGNRI HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF 240 LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator. {ECO:0000269|PubMed:17719007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477358.1 | 1e-177 | PREDICTED: basic leucine zipper 61-like | ||||
Refseq | XP_018477359.1 | 1e-177 | PREDICTED: basic leucine zipper 61-like | ||||
Swissprot | Q9M2K4 | 1e-137 | BZP61_ARATH; Basic leucine zipper 61 | ||||
TrEMBL | M4CT38 | 1e-144 | M4CT38_BRARP; Uncharacterized protein | ||||
STRING | XP_010427719.1 | 1e-144 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1753 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 1e-130 | bZIP family protein |
Publications ? help Back to Top | |||
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