 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC297_p3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HSF |
| Protein Properties |
Length: 143aa MW: 16765.6 Da PI: 10.8077 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC297_p3 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 52.9 | 1e-16 | 15 | 113 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkel 93
F k ly +++d++l++++sws++++sf+++d+ ef+++vLp+ + nf+ F+ L+ YgF +vk ++k+ + h++ F +gk el
RrC297_p3 15 FYKGLYAVVDDPSLDSVVSWSKDKKSFIIWDPIEFQRRVLPTgrerRIRSLNFSMFMADLKFYGFIRVKGSNKH------RYHIGHPKyFVRGKPEL 105
8899************************************86555589999*******************9987......55666766689999999 PP
XXXXXXXX CS
HSF_DNA-bind 94 lekikrkk 101
++k++ ++
RrC297_p3 106 MKKMQEER 113
99988654 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 143 aa
Download sequence Send
to blast |
MHVPVTVTDN SLSSFYKGLY AVVDDPSLDS VVSWSKDKKS FIIWDPIEFQ RRVLPTGRER 60
RIRSLNFSMF MADLKFYGFI RVKGSNKHRY HIGHPKYFVR GKPELMKKMQ EERIQKFEQA 120
RAMRKKAKAR AMELADSLGH LAL
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC241146 | 2e-95 | AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence. |
