PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC295_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 121aa MW: 13793 Da PI: 8.9603

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC295_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128	4.4e-40	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaC++lrr+C+kdCv++pyfp ++p+kfa+vh+++Ga nv+k+l++lp ++r +a++sl++eA +r++dPvyG+vg+i+ lq q++++k+ la++++e RrC295_p2 5 RCAACRYLRRRCPKDCVFSPYFPPNNPEKFACVHRIYGAGNVSKMLQQLPVQTRAEAVESLCFEATCRIEDPVYGCVGMISLLQTQIQKTKNLLARTQAE 104 6*******************************************************************************************99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.433	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.5E-40	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MNPKRCAACR YLRRRCPKDC VFSPYFPPNN PEKFACVHRI YGAGNVSKML QQLPVQTRAE 60 AVESLCFEAT CRIEDPVYGC VGMISLLQTQ IQKTKNLLAR TQAEITVAQI KHSQNQHSEF 120 M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473846	1e-111	AB473846.1 Arabidopsis thaliana ASL13 mRNA for ASYMMETRIC LEAVES2-like 13 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433035.1	5e-87	PREDICTED: LOB domain-containing protein 24-like
Refseq	XP_018433045.1	5e-87	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	1e-74	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A078GTX3	2e-84	A0A078GTX3_BRANA; BnaC02g36230D protein
TrEMBL	A0A0D2ZPE8	2e-84	A0A0D2ZPE8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DFN9	2e-84	A0A3P6DFN9_BRAOL; Uncharacterized protein
STRING	Bo00285s360.1	3e-85	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-65	LOB domain-containing protein 24