PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2959_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 481aa MW: 53671.7 Da PI: 9.0885

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2959_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.8e-10	177	218	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L RrC2959_p4 177 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 218 5889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.7E-7	174	251	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	176	220	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-7	177	218	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.3E-8	177	221	No hit	No description
CDD	cd14708	2.23E-22	178	230	No hit	No description
SuperFamily	SSF57959	6.25E-7	178	220	No hit	No description
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-28	259	334	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MKRKMATNHN HTHHLSYSLL HGLSSNPPPP GFINQDGSSS FDFGELEEAI VLQGVKYRNN 60 ETKPPLFAGG ATTLEMFPSW PIRTHQTLPT EESSKSGGES TDSGSANFSG KAESQQPESP 120 MSSKQNHHLM LQQHQRNNNM ANSGSTSGLP STSRTPAPPK ASEDKRKATT SGKLLDAKTL 180 RRLAQNREAA RKSRLRKKAY VQQLESSRIK LSQLEQELQR ARSQGMFMGG CGPPGPNITS 240 GAAMFDMEYG RWLEEDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEV LRLKAVAAKA 300 DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE 360 ALSQGLEQLQ QSLIDTLAAS PVMDGMQQMA VALGKISNLE GFIRQADNLR QQTVHQLRRI 420 LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLISDET SCQTTTDLQM VQSSRNNFSN 480 F

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MKRKMATNHN HTHHLSYSLL HGLSSNPPPP GFINQDGSSS FDFGELEEAI VLQGVKYRNN  60
ETKPPLFAGG ATTLEMFPSW PIRTHQTLPT EESSKSGGES TDSGSANFSG KAESQQPESP  120
MSSKQNHHLM LQQHQRNNNM ANSGSTSGLP STSRTPAPPK ASEDKRKATT SGKLLDAKTL  180
RRLAQNREAA RKSRLRKKAY VQQLESSRIK LSQLEQELQR ARSQGMFMGG CGPPGPNITS  240
GAAMFDMEYG RWLEEDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEV LRLKAVAAKA  300
DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE  360
ALSQGLEQLQ QSLIDTLAAS PVMDGMQQMA VALGKISNLE GFIRQADNLR QQTVHQLRRI  420
LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLISDET SCQTTTDLQM VQSSRNNFSN  480
F

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314757	0.0	AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBank	HQ132743	0.0	HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638917.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A3P6F109	0.0	A0A3P6F109_BRAOL; Uncharacterized protein
STRING	Bo5g008940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]