PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC293_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 308aa    MW: 34025.6 Da    PI: 9.6798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC293_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13100145247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT++E+  ++ + k+lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
        RrC293_p2 100 KPWTEDEHRMFLVGLKKLGKGDWRGIAKSFVTTRTPTQVASHAQKY 145
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.91894150IPR017930Myb domain
SuperFamilySSF466897.48E-1796150IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-1797148IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.5E-1198144IPR009057Homeodomain-like
SMARTSM007176.7E-1198148IPR001005SANT/Myb domain
PfamPF002491.6E-11100145IPR001005SANT/Myb domain
CDDcd001671.44E-9101146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTTAKTCSNG GNNVHDARTC CLNIVHKGSV KLFGVDISSD PIKSPEVTAL RKCLSLGNLD  60
SLLDNGNGDL IAAVEDTGYH SDGQIHSKRG RSSHEKKKGK PWTEDEHRMF LVGLKKLGKG  120
DWRGIAKSFV TTRTPTQVAS HAQKYFLRLN GNDKRKRRAS LFDISLEDQK GKEKNSPDAS  180
TSSSKTPSKQ PITGSQEPVQ VQTPTEVSNR FQNLSMGYMP TYQNVPPYYN FSPFMFHPMY  240
YANLVPIRYD HPSGIPVPRH VPISMPQPHL DEVSDMTKKE GLELDIGLPP PKSTGATDLT  300
ANGIIHVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461292.10.0PREDICTED: myb-like protein J isoform X1
SwissprotQ9FKF91e-162M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A078JNX70.0A0A078JNX7_BRANA; BnaCnng59200D protein
TrEMBLA0A0D3AY640.0A0A0D3AY64_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QIE50.0A0A3N6QIE5_BRACR; Uncharacterized protein
TrEMBLA0A3P6DV640.0A0A3P6DV64_BRAOL; Uncharacterized protein
STRINGBo2g161470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-139MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]