PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC29350_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 195aa MW: 22738.9 Da PI: 7.1803

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC29350_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.6	1.9e-09	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i + + r+ tf R+n ++ K +EL vLCd++ + i+ +++ RrC29350_p1 11 ITDGTEREATFNLRKNELIQKLHELHVLCDVDMCAFIYNQSN 52 778899****************************99998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.2E-13	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.769	1	56	IPR002100	Transcription factor, MADS-box
CDD	cd00120	3.34E-17	2	60	No hit	No description
SuperFamily	SSF55455	1.03E-19	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-6	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-10	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-6	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-6	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGKKKMDITY ITDGTEREAT FNLRKNELIQ KLHELHVLCD VDMCAFIYNQ SNPIPEVWPS 60 HSEVKSILEK FEKFSEKKKT CRSVNHEEFL HQMIEKARTK RQKQNAQNKE KYMRELMFAF 120 LSGNMKDLSL NNDDRSELCS FIDKYLKELV HHNNQTLNNP NFEIGQSSSV ALDMNIVQTS 180 IVEAGFLFLS GLQNT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437602.1	1e-121	PREDICTED: agamous-like MADS-box protein AGL80 isoform X1
TrEMBL	A0A078HM65	1e-115	A0A078HM65_BRANA; BnaC01g28010D protein
STRING	Bo1g088030.1	1e-115	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28700.1	3e-52	AGAMOUS-like 46