PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC28822_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 148aa MW: 16419.8 Da PI: 10.4006

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC28822_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	2e-08	111	138	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 +a n +E+rRR +i++++e+L++l P++ RrC28822_p1 111 EARNVAEKRRRTDIKTKIENLKQLTPNC 138 578***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.89E-6	105	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-7	108	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.842	108	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-5	112	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MNNDQESVQF WSSLLHSVAS SDPKDDHLPE ISSPLMVMST SMAIDVSLKP LNAPGDGQKA 60 GPQKAIAETG DKSIDKGGQR SAKKQIQVKK KEGEKEEMKN LSKSKRSRTN EARNVAEKRR 120 RTDIKTKIEN LKQLTPNCKK VHTICLPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022568090.1	2e-74	putative transcription factor bHLH056 isoform X1
TrEMBL	A0A397YYX4	1e-81	A0A397YYX4_BRACM; Uncharacterized protein
STRING	Bo6g097200.1	2e-72	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15740	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-07	phytochrome interacting factor 3