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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2881_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | SBP | ||||||||
Protein Properties | Length: 703aa MW: 79082.1 Da PI: 7.7657 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 114.6 | 5.5e-36 | 100 | 176 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+ e+k yh+rh+vC ++++a++v+++g+ +r+CqqC++fh l +fDe+krsCrr+L++hn+rr++k RrC2881_p1 100 RCQVPGCEVDIRELKGYHKRHRVCLTCANASSVVLDGEDKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNNRRKRKD 176 6************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.3E-28 | 94 | 162 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.162 | 98 | 175 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-33 | 99 | 177 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.5E-27 | 101 | 174 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MWDWGDLLDF AADDTLLFSP APPPPPMIAT QQPPTQSESY PSPDESGSGS DRVRKRDPRL 60 LCSNFVQGMV PCSCPELDQK LEEAELPKRK RVRGGSGVVR CQVPGCEVDI RELKGYHKRH 120 RVCLTCANAS SVVLDGEDKR YCQQCGKFHV LPDFDEGKRS CRRKLERHNN RRKRKDKGGV 180 ASKEQQVLSQ NDNSVIDVDD GKDNTCSSDQ RVEQEASLIC EDWNIPTQGS VPFPRSINAD 240 NFVPVTGSGE AQPDEGMNDT KFELSPSRGD NKSAYSTVCP TGRISFKLYD WNPAEFPRRL 300 RHQIFQWLAN MPVELEGYVR PGCGTTLKRV DVKLESPKLQ FVYPTCFEAG KPIELMVCGL 360 NLVQPKCRFL VSFAGKYLPH NYSVVPAPDQ NGKRSCNNKL YRINIVNSDP NLFGPAFVEV 420 ENESGLSNFI PLIIGDKAIC SEMKLIEQKF NAALFPEEQY VTACCCSLTC RCRDFKERQN 480 TFTGLLLDIA WSVKVPSAEC TELTVNRCQI KRYNRVLDYL KQSNSPSILG NILHNLEILV 540 KKMEPDSLIH SKCDCDVRLL HENMNLARKQ QSHEDSKLDP VTSSCCCESS FQKDIPSRTL 600 NFNQDPEAGL DCKERVQATS LDAGGKETDP LLNKEVVMNV NDIGNWPRKS CISRHTAQTF 660 RSRQTALLIT TFVVCFAVCA VIYHPNKVRQ LSVAIRARLA HKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 2e-43 | 98 | 181 | 3 | 88 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 175 | RRKRKD |
2 | 171 | 176 | RKRKDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461585.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q8S9G8 | 0.0 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A0D2ZQ95 | 0.0 | A0A0D2ZQ95_BRAOL; Uncharacterized protein | ||||
STRING | Bo00629s160.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6358 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |