PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 297aa MW: 33418.9 Da PI: 5.0687

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2874_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.8e-08	28	72	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT eE +++ +a + + ++ +W ++a++++ g+t +++ + RrC2874_p5 28 KWTHEENKKFENALAYYDKDtpdRWYKVAAMLP-GKTVGDVIKQYK 72 8******************************.**99988775 PP
2	Myb_DNA-binding	48.6	1.9e-15	140	184	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky RrC2874_p5 140 PWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 184 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-4	23	73	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.789	24	77	IPR017884	SANT domain
SMART	SM00717	1.9E-8	25	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.12E-11	27	79	IPR009057	Homeodomain-like
CDD	cd00167	3.84E-6	28	74	No hit	No description
Pfam	PF00249	2.1E-6	28	72	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.845	133	189	IPR017930	Myb domain
SuperFamily	SSF46689	1.66E-17	135	188	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-18	136	188	IPR006447	Myb domain, plants
SMART	SM00717	8.7E-14	137	187	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-13	137	184	IPR009057	Homeodomain-like
CDD	cd00167	2.75E-11	140	185	No hit	No description
Pfam	PF00249	7.7E-13	140	184	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MYRGIQVMSP ATYLDTSNWL FQENKGTKWT HEENKKFENA LAYYDKDTPD RWYKVAAMLP 60 GKTVGDVIKQ YKELEEDLSD IEAGLIPIPG YASDSFTLDW GGYDAGNNGF DMNGYYFAAA 120 GGKRGSAARA AEHERKKGVP WTEEEHRQFL MGLKKYGKGD WRNIARNFVT TRTPTQVASH 180 AQKYFIRQVN GGKDKRRSSI HDITTVNIPD SPDAAATDTA TANTPCSPPS VGGSQWEASD 240 QWEGQTTYDE TAAAFYNQNA FQETLLEMSS TPYMAKLQEQ SFLNASQFES YNAYLQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-16	26	93	8	75	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118135	0.0	AK118135.1 Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04.
GenBank	AY519529	0.0	AY519529.1 Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds.
GenBank	BT006122	0.0	BT006122.1 Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018473198.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-92	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	R0FXY9	0.0	R0FXY9_9BRAS; Uncharacterized protein
STRING	Cagra.0090s0025.1.p	0.0	(Capsella grandiflora)
STRING	XP_006294698.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1228	27	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	0.0	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]