PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 388aa MW: 42520.2 Da PI: 7.6614

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC286_p9	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.6e-16	41	86	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g W+ eEd l ++v+++G+++W++ ar ++ gR++k+c++rw + RrC286_p9 41 KGTWSREEDVMLSELVEKFGPRNWSSMARSIP-GRSGKSCRLRWCNQ 86 799***************************.*********985 PP
2	Myb_DNA-binding	52.4	1.3e-16	93	135	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+++T+ Ede ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ RrC286_p9 93 RNPFTEVEDEAIITAHAIHGNK-WSVIAKLLP-GRTDNAIKNHWN 135 789*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.687	36	87	IPR017930	Myb domain
SuperFamily	SSF46689	6.24E-30	39	134	IPR009057	Homeodomain-like
SMART	SM00717	9.0E-15	40	89	IPR001005	SANT/Myb domain
Pfam	PF00249	9.9E-16	41	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-23	42	94	IPR009057	Homeodomain-like
CDD	cd00167	9.59E-14	43	85	No hit	No description
PROSITE profile	PS51294	25.132	88	142	IPR017930	Myb domain
SMART	SM00717	2.6E-16	92	140	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	93	135	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-23	95	141	IPR009057	Homeodomain-like
CDD	cd00167	1.51E-12	95	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MTEEAVAAGG RRYDDCGGAA AERFVGEGTS VGRRTRKKRI KGTWSREEDV MLSELVEKFG 60 PRNWSSMARS IPGRSGKSCR LRWCNQLDPS LKRNPFTEVE DEAIITAHAI HGNKWSVIAK 120 LLPGRTDNAI KNHWNATLRR RCTTDFETLR TTNTATGNLV PQDSRFDRTM NTTNTTIASS 180 EDTLSSGGGG GFGHVTTPLV SSDGKEATSM EISEEQCGDK ANEEDISRQE CNNNDDPPTL 240 FRPVAKLSSF NPYNHMGGSS SPHALNQNKF QSCKQDTAML RLLEGAYSER FVPQKCGSAC 300 CSSTPQKNSL LGPEFVDYLD PPTFPSYELA AIATDISSLA WLRSGLESSS VRAMEEAAGR 360 LRPQGTRGHR DHCLVSEQGK SRTNALST

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MTEEAVAAGG RRYDDCGGAA AERFVGEGTS VGRRTRKKRI KGTWSREEDV MLSELVEKFG  60
PRNWSSMARS IPGRSGKSCR LRWCNQLDPS LKRNPFTEVE DEAIITAHAI HGNKWSVIAK  120
LLPGRTDNAI KNHWNATLRR RCTTDFETLR TTNTATGNLV PQDSRFDRTM NTTNTTIASS  180
EDTLSSGGGG GFGHVTTPLV SSDGKEATSM EISEEQCGDK ANEEDISRQE CNNNDDPPTL  240
FRPVAKLSSF NPYNHMGGSS SPHALNQNKF QSCKQDTAML RLLEGAYSER FVPQKCGSAC  300
CSSTPQKNSL LGPEFVDYLD PPTFPSYELA AIATDISSLA WLRSGLESSS VRAMEEAAGR  360
LRPQGTRGHR DHCLVSEQGK SRTNALST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	9e-37	40	141	3	104	C-Myb DNA-Binding Domain
1msf_C	9e-37	40	141	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ694827	0.0	HQ694827.1 Brassica rapa var. purpuraria transcription factor MYB1 protein mRNA, complete cds.
GenBank	HQ694828	0.0	HQ694828.1 Brassica rapa subsp. chinensis transcription factor MYB1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439334.1	0.0	PREDICTED: myb protein
Swissprot	Q42575	1e-178	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A0N6Z007	0.0	A0A0N6Z007_BRANA; MYB transcription factor 1
STRING	Bra034057.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-174	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]