PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC286_p9
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 388aa    MW: 42520.2 Da    PI: 7.6614
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC286_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-164186147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g W+ eEd  l ++v+++G+++W++ ar ++ gR++k+c++rw + 
        RrC286_p9 41 KGTWSREEDVMLSELVEKFGPRNWSSMARSIP-GRSGKSCRLRWCNQ 86
                     799*****************************.***********985 PP
2Myb_DNA-binding52.41.3e-1693135145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r+++T+ Ede ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w+
        RrC286_p9  93 RNPFTEVEDEAIITAHAIHGNK-WSVIAKLLP-GRTDNAIKNHWN 135
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6873687IPR017930Myb domain
SuperFamilySSF466896.24E-3039134IPR009057Homeodomain-like
SMARTSM007179.0E-154089IPR001005SANT/Myb domain
PfamPF002499.9E-164186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-234294IPR009057Homeodomain-like
CDDcd001679.59E-144385No hitNo description
PROSITE profilePS5129425.13288142IPR017930Myb domain
SMARTSM007172.6E-1692140IPR001005SANT/Myb domain
PfamPF002491.7E-1493135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2395141IPR009057Homeodomain-like
CDDcd001671.51E-1295138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MTEEAVAAGG RRYDDCGGAA AERFVGEGTS VGRRTRKKRI KGTWSREEDV MLSELVEKFG  60
PRNWSSMARS IPGRSGKSCR LRWCNQLDPS LKRNPFTEVE DEAIITAHAI HGNKWSVIAK  120
LLPGRTDNAI KNHWNATLRR RCTTDFETLR TTNTATGNLV PQDSRFDRTM NTTNTTIASS  180
EDTLSSGGGG GFGHVTTPLV SSDGKEATSM EISEEQCGDK ANEEDISRQE CNNNDDPPTL  240
FRPVAKLSSF NPYNHMGGSS SPHALNQNKF QSCKQDTAML RLLEGAYSER FVPQKCGSAC  300
CSSTPQKNSL LGPEFVDYLD PPTFPSYELA AIATDISSLA WLRSGLESSS VRAMEEAAGR  360
LRPQGTRGHR DHCLVSEQGK SRTNALST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-37401413104C-Myb DNA-Binding Domain
1msf_C9e-37401413104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6948270.0HQ694827.1 Brassica rapa var. purpuraria transcription factor MYB1 protein mRNA, complete cds.
GenBankHQ6948280.0HQ694828.1 Brassica rapa subsp. chinensis transcription factor MYB1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439334.10.0PREDICTED: myb protein
SwissprotQ425751e-178MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A0N6Z0070.0A0A0N6Z007_BRANA; MYB transcription factor 1
STRINGBra034057.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-174myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]