PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2777_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 351aa    MW: 39100.2 Da    PI: 4.8669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2777_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.00013296337854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 
                 +E+ R d+i++a+  L +++P a      K ++    L +A++Y+k L
  RrC2777_p2 296 NEQSRKDKIRTALKILESIVPGA------KgNEALLLLDEAIDYLKLL 337
                 69********************9......5599999*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.232288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-6296340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-4297339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVCQSPGKTR FRALKYETGD ANRPAIVVRV IACFQPMDNC QCLLYSLKLP SCKSMPLDTR  60
QRDLPPPACF EDIAAPSLPL PELGKLFAAE RHAPPPLQSL LWSHDDKRFS LSDMRSWCAA  120
AATPHGALES PHKGLMIFDQ SGNQTRLLRC PFPLRFPSPR AAEPVKLSEL LQHGLREDHV  180
ALEEFDEKCV NGKESEMHED TEEINALLYS DDDYDDGDDC ESDDEVMSTG HSPYQVCNKR  240
ALEEIDNSPY KRQKLLDKVE DISGSSSSSS LVGSKDEKLP ESNISTKEDT GSGLSNEQSR  300
KDKIRTALKI LESIVPGAKG NEALLLLDEA IDYLKLLKRD LISTTEIKNH C
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269|PubMed:16936072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892076e-60AC189207.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007I19, complete sequence.
GenBankAC2325266e-60AC232526.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB083J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492738.11e-160PREDICTED: transcription factor SAC51
SwissprotQ9FMF41e-117SAC51_ARATH; Transcription factor SAC51
TrEMBLA0A0D3BF510.0A0A0D3BF51_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BBN70.0A0A3P6BBN7_BRAOL; Uncharacterized protein
STRINGBo3g101410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55461014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-06bHLH family protein
Publications ? help Back to Top
  1. Imai A, et al.
    The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene.
    Development, 2006. 133(18): p. 3575-85
    [PMID:16936072]
  2. Imai A,Komura M,Kawano E,Kuwashiro Y,Takahashi T
    A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana.
    Plant J., 2008. 56(6): p. 881-90
    [PMID:18694459]
  3. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  4. Cai Q, et al.
    The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis.
    Plant Cell Physiol., 2016. 57(8): p. 1583-92
    [PMID:27388339]
  5. Yamamoto M,Takahashi T
    Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis.
    Plant Signal Behav, 2017. 12(1): p. e1276685
    [PMID:28045577]