PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC276_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 426aa    MW: 47147.2 Da    PI: 6.3255
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC276_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073633962154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  RrC276_p3 363 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 396
                469*****************************87 PP
2ELK28.82.8e-10317338122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  RrC276_p3 317 ELKHELKQGYKEKIVDIREEIL 338
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19151195IPR005540KNOX1
PfamPF037901.1E-17154194IPR005540KNOX1
SMARTSM012562.0E-29207262IPR005541KNOX2
PfamPF037912.7E-21211261IPR005541KNOX2
PfamPF037899.9E-7317338IPR005539ELK domain
PROSITE profilePS512139.969317337IPR005539ELK domain
SMARTSM011886.1E-4317338IPR005539ELK domain
PROSITE profilePS5007111.726337400IPR001356Homeobox domain
SuperFamilySSF466895.13E-16339403IPR009057Homeodomain-like
SMARTSM003892.4E-11339404IPR001356Homeobox domain
CDDcd000863.76E-12340401No hitNo description
Gene3DG3DSA:1.10.10.603.6E-25344401IPR009057Homeodomain-like
PfamPF059201.2E-17357396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAFHQNHHLS QDLSFNHFTD QHQPPPPQPP PQQQQHFHDA TPPPNWLNTA LLRSDNNNNN  60
FLNLHTTTAN NATAASSSDS PSSAAAVAAN QWLSRSSSFL QRTGNNNNSN AVVGDVIDDV  120
TGGGGGAEQM MSGGENKNDG GGDGVVSWQN ARHKAEILSH PLYEQLLSAH VACLRIATPV  180
DQLPRIDAQL AQSQHVVAKY STLGAGGQGL VGDDKELDQF MTHYVLLLCS FKEQLQQHVR  240
VHAMEAVMAC WEIEQSLQSL TGVSPGEGMG ATMSDDEDEQ VESDANMFDG GGLDVLGFGP  300
LIPTESERSL MERVRQELKH ELKQGYKEKI VDIREEILRK RRAGKLPGDT TSVLKAWWQS  360
HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS NPSSSTVLKN KRKSNAGDNS  420
GRERFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12340404872Homeobox protein PKNOX1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529660.0AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459220.10.0PREDICTED: homeobox protein knotted-1-like 3
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A178U9D10.0A0A178U9D1_ARATH; KNAT3
STRINGAT5G25220.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]