PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2766_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 297aa    MW: 34183.2 Da    PI: 8.4417
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2766_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-1673118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +grW + Ed++l+++vkq+G+ +W+ I +++  gRt+k+c+ rw + 
       RrC2766_p3  73 KGRWKPFEDDKLKQLVKQYGPQNWNIIGQHLS-GRTGKSCRQRWCNQ 118
                      79******************************.***********985 PP
2Myb_DNA-binding55.21.6e-17126168246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eE+e l++a++ +G++ W+ Ia+ ++ gRt++ +k++++ 
       RrC2766_p3 126 GPFTKEEEEMLLEAHRIYGNR-WSVIAKLLP-GRTDNAIKNHYHV 168
                      89*******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.24368123IPR017930Myb domain
SuperFamilySSF466894.87E-3070166IPR009057Homeodomain-like
SMARTSM007175.2E-1372121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2474126IPR009057Homeodomain-like
CDDcd001671.02E-1175117No hitNo description
PfamPF139211.6E-1676136No hitNo description
SMARTSM007175.2E-16124172IPR001005SANT/Myb domain
PROSITE profilePS5129418.462124174IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-21127172IPR009057Homeodomain-like
CDDcd001674.73E-13127167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDASWSQWLS EINTFEDLAG VLNPTSSVVF VESERTLYFR IQMVYQVEME IATIGMSRGS  60
NSCDNKKTKG HPKGRWKPFE DDKLKQLVKQ YGPQNWNIIG QHLSGRTGKS CRQRWCNQLA  120
PYLNNGPFTK EEEEMLLEAH RIYGNRWSVI AKLLPGRTDN AIKNHYHVIM TRRRRRGFSS  180
TPTSPFNQIW SPIFTLPSLS AYLYPFQRYQ MDNSRSPWPY TSASAPRSDQ LGSSWISNAQ  240
QETDDFERRK SNEMVVHQAA TPDHEKNSSG EDGTSMIDHG EKRDVPFFDF LGVGLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-34731737107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479042.11e-180PREDICTED: transcriptional activator Myb-like
TrEMBLA0A0D3DHG81e-151A0A0D3DHG8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EXP31e-151A0A3P6EXP3_BRAOL; Uncharacterized protein
STRINGBo7g116160.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.19e-94myb domain protein 69