PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 324aa MW: 36284.5 Da PI: 9.6206

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2765_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H RrC2765_p1 75 FICEICNKGFQRDQNLQLHKRGH 97 89******************988 PP
2	zf-C2H2	14.2	0.00013	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ RrC2765_p1 152 WKCDKCSKKYAVQSDWKAHAKTC 174 58******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.4E-6	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.81E-7	74	97	No hit	No description
PROSITE profile	PS50157	10.803	75	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	75	97	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	1.9E-5	75	97	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	117	147	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	140	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.81E-7	147	172	No hit	No description
SMART	SM00355	150	152	172	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MSNLTSASGD QASVSSGNRT ETSGSNFQYN INPNQQQEEQ CPAPQRKKRN QPGNPDPDAE 60 VMALSPKTLM ATNRFICEIC NKGFQRDQNL QLHKRGHNLP WKLKQRSNKD VIRKKVYVCP 120 EPSCVHHHPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK YAVQSDWKAH AKTCGTKEYK 180 CDCGTLFSRR DSFITHRAFC DALAEESARA IPNPILIQSS SPHDHQTQQH NINFSSSSQN 240 ITGNNNNLHG HELPTKQEEP HHHFHNIPPW LISSNPNPSG NNANYFPLAS SSASFHHSSP 300 AMSATALLQK AAQMGHSKPT TTPE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-37	148	209	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-37	148	209	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	114	KLKQRSNKDVIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352994	0.0	AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018451546.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-172	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3P6BBU9	0.0	A0A3P6BBU9_BRACM; Uncharacterized protein
TrEMBL	M4EQ15	0.0	M4EQ15_BRARP; Uncharacterized protein
STRING	Bra030886.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-153	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]