PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC27450_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 293aa MW: 33506.9 Da PI: 5.9677

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC27450_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.3	4.2e-13	12	54	6	48
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 + ++ + f R +++lKKA+ELS LC+++ +vi + +g+l + RrC27450_p1 12 SVRKDTFFKARAKTVLKKAYELSQLCGVNLCVICYDREGNLVT 54 6677788888***************************999854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.8E-4	1	58	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.18E-16	12	85	No hit	No description
PROSITE profile	PS50066	8.984	12	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.76E-13	13	95	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.8E-10	15	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTTRKTCRSK LSVRKDTFFK ARAKTVLKKA YELSQLCGVN LCVICYDREG NLVTTWPEND 60 EAQVKATAER FSRLSEQERN KKSTNLSRFL NKKMMDEKKA SLRANDNKFS KKVFVFEDSL 120 QSRLGLFQEK ITELVDDDHG VVVSTDLASE DPSLINVDQY QPISMNHLST TEIPADLPTT 180 SLNQPSNFSI LLFNHDNGTF TQLANSSALP PSFEQPMIPF NQDYGTNYLD LLLGEQDMRS 240 CSNFDLPIPP HPMMHTQTSM FQQFDHQFMQ TQPEMILYNQ TQSSSGYPTM MFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443452.1	0.0	PREDICTED: agamous-like MADS-box protein AGL53
Refseq	XP_018443454.1	0.0	PREDICTED: agamous-like MADS-box protein AGL53
TrEMBL	A0A3P6BZS0	1e-78	A0A3P6BZS0_BRACM; Uncharacterized protein
TrEMBL	M4CIN7	1e-78	M4CIN7_BRARP; Uncharacterized protein
STRING	Bra004071.1-P	2e-79	(Brassica rapa)
STRING	Bo6g014360.1	1e-77	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15639	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27070.1	7e-46	AGAMOUS-like 53