PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2737_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 403aa    MW: 45392.5 Da    PI: 9.7492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2737_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-1688134148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTteEde l +av  +  ++Wk+Ia+ ++  Rt+ qc +rwqk+l
       RrC2737_p4  88 KGGWTTEEDETLRQAVCTYNAKSWKKIAEFFP-DRTEVQCLHRWQKVL 134
                      688*****************************.************986 PP
2Myb_DNA-binding61.61.6e-19140186148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde++v++v ++G+  W+tIa+ ++ gR +kqc++rw+++l
       RrC2737_p4 140 KGPWTQEEDEKIVELVGKYGPAKWSTIAKSLQ-GRIGKQCRERWHNHL 186
                      79******************************.*************97 PP
3Myb_DNA-binding27.48e-09192219129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      + +WT+eE++ l +a++ +G++ W+ Ia+
       RrC2737_p4 192 KEAWTPEEELALMNAHRVHGNK-WAEIAK 219
                      579*******************.*****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2183134IPR017930Myb domain
SuperFamilySSF466894.09E-1785144IPR009057Homeodomain-like
SMARTSM007171.3E-1387136IPR001005SANT/Myb domain
PfamPF002491.2E-1488134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2290142IPR009057Homeodomain-like
CDDcd001671.26E-1191134No hitNo description
PROSITE profilePS5129432.137135190IPR017930Myb domain
SuperFamilySSF466893.33E-25137221IPR009057Homeodomain-like
SMARTSM007176.4E-17139188IPR001005SANT/Myb domain
PfamPF002491.2E-17140186IPR001005SANT/Myb domain
CDDcd001676.04E-14142186No hitNo description
Gene3DG3DSA:1.10.10.601.6E-25143188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-11189220IPR009057Homeodomain-like
SMARTSM007170.037191228IPR001005SANT/Myb domain
PROSITE profilePS512949.218191230IPR017930Myb domain
PfamPF002491.9E-7192219IPR001005SANT/Myb domain
CDDcd001673.15E-4194220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MRFVSQIRFQ GFLFVRSGER RGGEEVKMEE DECVENKQST AASCSSVSEG SGSGSGSFLL  60
KSPPAVASPP PTLSPTHRRT SGPIRRAKGG WTTEEDETLR QAVCTYNAKS WKKIAEFFPD  120
RTEVQCLHRW QKVLNPDLIK GPWTQEEDEK IVELVGKYGP AKWSTIAKSL QGRIGKQCRE  180
RWHNHLNPGI NKEAWTPEEE LALMNAHRVH GNKWAEIAKN HWNSSLKKKS EFYLANGALP  240
PSAAKTGVLD SAATKRPLFY RRDSVTVAQT SSGTIQINKP DEDRKDQAAS PLTGVSEYGR  300
SPQLPNPEPS PENGYHLYYK NPPQTEYSMA SEADKQRMYG YECGCSPSAS PVIFFTPPPP  360
SRKEYINGKD DAGLLLFLIV TTRPRKEMKK LLLKRWLLLI KRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-59872295158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-59872295158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2141171e-126AF214117.2 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R3) mRNA, complete cds.
GenBankAY0349641e-126AY034964.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY1426491e-126AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY5196511e-126AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486080.10.0PREDICTED: myb-like DNA-binding protein myb-1
SwissprotQ8H1P91e-158MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A078I1H30.0A0A078I1H3_BRANA; BnaA05g29060D protein
STRINGBra029762.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.21e-147myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]