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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC2737_p4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 403aa MW: 45392.5 Da PI: 9.7492 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC2737_p4 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.4 | 5e-16 | 88 | 134 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WTteEde l +av + ++Wk+Ia+ ++ Rt+ qc +rwqk+l
RrC2737_p4 88 KGGWTTEEDETLRQAVCTYNAKSWKKIAEFFP-DRTEVQCLHRWQKVL 134
688*****************************.************986 PP
|
| 2 | Myb_DNA-binding | 61.6 | 1.6e-19 | 140 | 186 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde++v++v ++G+ W+tIa+ ++ gR +kqc++rw+++l
RrC2737_p4 140 KGPWTQEEDEKIVELVGKYGPAKWSTIAKSLQ-GRIGKQCRERWHNHL 186
79******************************.*************97 PP
|
| 3 | Myb_DNA-binding | 27.4 | 8e-09 | 192 | 219 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29
+ +WT+eE++ l +a++ +G++ W+ Ia+
RrC2737_p4 192 KEAWTPEEELALMNAHRVHGNK-WAEIAK 219
579*******************.*****8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MRFVSQIRFQ GFLFVRSGER RGGEEVKMEE DECVENKQST AASCSSVSEG SGSGSGSFLL 60
KSPPAVASPP PTLSPTHRRT SGPIRRAKGG WTTEEDETLR QAVCTYNAKS WKKIAEFFPD 120
RTEVQCLHRW QKVLNPDLIK GPWTQEEDEK IVELVGKYGP AKWSTIAKSL QGRIGKQCRE 180
RWHNHLNPGI NKEAWTPEEE LALMNAHRVH GNKWAEIAKN HWNSSLKKKS EFYLANGALP 240
PSAAKTGVLD SAATKRPLFY RRDSVTVAQT SSGTIQINKP DEDRKDQAAS PLTGVSEYGR 300
SPQLPNPEPS PENGYHLYYK NPPQTEYSMA SEADKQRMYG YECGCSPSAS PVIFFTPPPP 360
SRKEYINGKD DAGLLLFLIV TTRPRKEMKK LLLKRWLLLI KRW
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF214117 | 1e-126 | AF214117.2 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R3) mRNA, complete cds. |
| GenBank | AY034964 | 1e-126 | AY034964.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds. |
| GenBank | AY142649 | 1e-126 | AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds. |
| GenBank | AY519651 | 1e-126 | AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds. |
