PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC268_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 348aa    MW: 39115.6 Da    PI: 6.0545
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC268_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06119139526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ G C++Gd+C FaHg
  RrC268_p5 119 ACPDFRK-GCCRRGDSCEFAHG 139
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0866103IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6114140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258114141IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5119139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5119141IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568149173IPR000571Zinc finger, CCCH-type
SMARTSM003560.53149172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMIGETRRTY PTVEIPTWSV SEDLFSPAMN SPDCSMLEGL AALHRYLPSN DPDPDSDPDL  60
FGPDSPVDAY SCDHFRMYDF KVRRCARGRS HDWTECPYAH PGEKARRRDP TKYSYSGTAC  120
PDFRKGCCRR GDSCEFAHGV FECWLHPARY RTQPCKDGGN CRRRVCFFAH SPDQLRSLHN  180
RSPDRVDCFD VSSPVRRAFQ LSVSPVSSSP PMSPRADSEL SRSLGCSSVN DVVSSFRNLQ  240
VKSFPSSCNS PLRCYQSGFG SPRGSILGHG LQSLPTTTIR PGNMDTWENG LEEEPAMERV  300
VESGRELRAK MFEKLSKENC MDRAEPDPDP DQNSGEAPDV EWVSELVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137834.10.0PREDICTED: zinc finger CCCH domain-containing protein 49
RefseqXP_013685597.10.0zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A3P6A8T70.0A0A3P6A8T7_BRACM; Uncharacterized protein
STRINGBra011087.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-180C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]