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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2681_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 161aa MW: 17842.9 Da PI: 8.6832 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 56.7 | 4.8e-18 | 2 | 39 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt gC vkk+vers+++p++v +tYeg+H+h+ RrC2681_p5 2 RSYYRCTIVGCGVKKRVERSSDNPSIVMTTYEGQHTHP 39 9************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.142 | 1 | 41 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-13 | 2 | 39 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.6E-16 | 2 | 41 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-15 | 2 | 41 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-10 | 2 | 40 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MRSYYRCTIV GCGVKKRVER SSDNPSIVMT TYEGQHTHPF PMTPRGHIGM LTSPILDLGA 60 TTASSSSSFS IPQPRYLLSQ HHQPYSSMYN KNSLSMINRS SSSDGTFVNP GSSSFHGFAY 120 EMSQASTSTT TIRDHGLLQD ILPSQIRSDT INTRTNEEDK I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430059 | 1e-141 | KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435066.1 | 1e-114 | PREDICTED: probable WRKY transcription factor 48 | ||||
Swissprot | Q9FGZ4 | 3e-85 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A0D3AX35 | 5e-93 | A0A0D3AX35_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g151740.1 | 9e-94 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5624 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 1e-78 | WRKY DNA-binding protein 48 |
Publications ? help Back to Top | |||
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