PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

RrC2654_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 185aa MW: 20836.5 Da PI: 6.6619

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2654_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.8	5.4e-36	7	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aC++lrrkC+ dCv++pyf eq +++fa+vhk+FGasnv+k l +lp ++r++a+ ++ yeA r dPvyG+v++i++lqqq+++l++e++ l+ RrC2654_p2 7 SCGACRFLRRKCNIDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLSLPLHQRSAAAITISYEALSRKCDPVYGCVAHIFALQQQVMTLQEEIEFLG 105 6*********************9978****************************************************************99876 PP DUF260 99 e 99 + RrC2654_p2 106 T 106 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.592	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-34	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MAGHGSSCGA CRFLRRKCNI DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLSLPLHQ 60 RSAAAITISY EALSRKCDPV YGCVAHIFAL QQQVMTLQEE IEFLGTHMAN LSNTTQSRSQ 120 PTNMPEFLNQ MTMDTTTGFI DETVLNNDVG RNCIEGFFTN PEGVLVNHPW FQNMDHYYYA 180 PQHQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	3	108	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	3	108	7	111	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444637.1	1e-139	PREDICTED: LOB domain-containing protein 33
Swissprot	Q9LHS8	1e-100	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A291LR26	1e-130	A0A291LR26_BRARR; Transcription factor LBD33
TrEMBL	M4CY64	1e-130	M4CY64_BRARP; Uncharacterized protein
STRING	Bra009161.1-P	1e-131	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-102	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]