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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2640_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 74aa MW: 8760.92 Da PI: 11.1849 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 23 | 74 | 2 | 53 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L rq+ vWFqNrRa RrC2640_p2 23 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRA 74 78889**********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 77.4 | 2.3e-25 | 23 | 74 | 1 | 52 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRA RrC2640_p2 23 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRA 74 69*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 5 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-18 | 8 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.455 | 19 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-8 | 21 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.08E-12 | 22 | 74 | No hit | No description |
Pfam | PF00046 | 9.3E-16 | 23 | 74 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MNRLPSSSED DEELSHGGSA PPRKKLRLTR EQSRLLEDSF RQNHTLNPKQ KEALAKHLML 60 RPRQIEVWFQ NRRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353448 | 6e-84 | AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481701.1 | 9e-47 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like | ||||
Swissprot | Q8S9N6 | 3e-40 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | M4E7Y2 | 2e-44 | M4E7Y2_BRARP; Uncharacterized protein | ||||
STRING | Bra024888.1-P | 4e-45 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 7e-37 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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