PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC26244_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 281aa    MW: 32135.1 Da    PI: 6.1479
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC26244_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.53.1e-1225651150
                 HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
       SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                  ++  R +++lKKA+ELS LC+++v++i +  +g+l  +++
  RrC26244_p1 25 SSYKARGATVLKKAFELSELCGIDVCLIWYDREGNLvMTWP 65
                 58999**************************9998725776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0052466IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-1124101IPR002100Transcription factor, MADS-box
PfamPF003192.4E-72660IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.6342660IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKMTTTRKNK LSVRKETVFK KPSSSSYKAR GATVLKKAFE LSELCGIDVC LIWYDREGNL  60
VMTWPEKEEG NVRAMAERYS MLSEQERDKK SNNLSRFLNK KMIRDKKESL SKRDYKFFQQ  120
VSELEDSLQS RLQTLQESLL LDISSNDSTL INAYHHQASS LLNYPSSSTE SCVDDVSTTT  180
TSMNHPQSKF SILLYNHDDG TFTQLANSSA RPSFEQEPQI PCDQDYGYLD LLLGEQGMRG  240
CNNFDLLPTT SSTILPSLMQ TQTPNFQQFM QTQQAYDQIP S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444867.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A397YPC51e-133A0A397YPC5_BRACM; Uncharacterized protein
STRINGBra004071.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.13e-42AGAMOUS-like 53