PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2604_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 379aa MW: 41790.8 Da PI: 6.3882

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2604_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	270	317	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RrC2604_p3 270 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 317 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-16	264	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.24E-9	264	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.5E-16	266	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.37	266	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-6	270	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-10	272	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MDNELFMNTE LPPPPEMAVH FEQPSSSSAM LNWALMDPNL ARNSPPQDCF MWEKSTEQQQ 60 QQSIFDSALS SLVSSPTPSN SNYSGGDGFI IRELIGKLGN IGNTSGDIYG APMNSNSRSA 120 SCYATPMSSP PPMMSRTAPL TEFSGDPGFA ERAAKFSCFG SRSFNGRTNS GLPVNNNNGG 180 KIASSGKRRL SRPLLLRRKS KETPLPAAAS PSPSLSKTAE RKDEEEKGGK RRREEEGDEE 240 EGNKGNDTKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KIGERMKLLQ DLVPGCNKVT 300 GKALMLDEII NYVQSLQRQV EFLSMKLSSV NDTRLEFNVD ALVSKDAYQL FSEEDLQSIV 360 GMGMAHNPNH ESQNMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MDNELFMNTE LPPPPEMAVH FEQPSSSSAM LNWALMDPNL ARNSPPQDCF MWEKSTEQQQ  60
QQSIFDSALS SLVSSPTPSN SNYSGGDGFI IRELIGKLGN IGNTSGDIYG APMNSNSRSA  120
SCYATPMSSP PPMMSRTAPL TEFSGDPGFA ERAAKFSCFG SRSFNGRTNS GLPVNNNNGG  180
KIASSGKRRL SRPLLLRRKS KETPLPAAAS PSPSLSKTAE RKDEEEKGGK RRREEEGDEE  240
EGNKGNDTKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KIGERMKLLQ DLVPGCNKVT  300
GKALMLDEII NYVQSLQRQV EFLSMKLSSV NDTRLEFNVD ALVSKDAYQL FSEEDLQSIV  360
GMGMAHNPNH ESQNMKIEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250\|UniProtKB:Q8GY61, ECO:0000269\|PubMed:24130508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488610	1e-132	AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBank	BT002945	1e-132	BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBank	BT005637	1e-132	BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151654.1	0.0	PREDICTED: transcription factor bHLH78 isoform X2
Swissprot	Q9FJL4	1e-160	BH078_ARATH; Transcription factor bHLH78
TrEMBL	A0A0D3DBT1	0.0	A0A0D3DBT1_BRAOL; Uncharacterized protein
STRING	Bo7g089350.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	7e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]