PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC258_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | AP2 | ||||||||
Protein Properties | Length: 446aa MW: 50616.7 Da PI: 6.695 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.3 | 6.8e-12 | 256 | 312 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++gr++A+++d ++ g+++r + g ++ +e+Aa+a++ a+ k++g RrC258_p3 256 SQYRGVTKHRWTGRYEAHLWDnSCKkEGQTRRGRQGGYDDEEKAARAYDLAAIKYWG 312 78*******************77665555677777889999**************98 PP | |||||||
2 | AP2 | 47.2 | 5.6e-15 | 355 | 406 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g RrC258_p3 355 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 406 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-20 | 256 | 322 | No hit | No description |
Pfam | PF00847 | 2.8E-8 | 256 | 312 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-15 | 256 | 322 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-13 | 257 | 321 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 257 | 320 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-23 | 257 | 326 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-6 | 258 | 269 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-10 | 355 | 406 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.70E-26 | 355 | 415 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-17 | 355 | 414 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-18 | 356 | 414 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.019 | 356 | 414 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 356 | 420 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-6 | 396 | 416 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MNKWLGFSLT PHLRISDRVQ EEDEEQHRHE ENYVVSNQQK ALMPLNSDGS LFFTDHLTHP 60 PPPVWQYDIN LNHDDHHHHD EEVPKLEDFF SNSHQTERTP ISSHDQTNVN CTTMVNILSP 120 PGYLFHEPTV ATPQHSNLNP SLSHDYEGSV SVFKSWLMQG TPTFPVSNTY VSEEGSTSNT 180 SNFSHEDTDY NTSGSTLLLA MSHGAASDLI NELNVNVPVK EAVKVDEKRK SLVGKSQVKE 240 PVEPRKSFDS LGQRTSQYRG VTKHRWTGRY EAHLWDNSCK KEGQTRRGRQ GGYDDEEKAA 300 RAYDLAAIKY WGPTTHLNFP LSNYEKEMEE LNNMTRQEFV AMLRRNSSGF SRGASIYRGV 360 TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV TNFDICRYDV 420 KRICSNSTII NSDQAKRSPS SSASGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009127942.2 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 0.0 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A398AAY1 | 0.0 | A0A398AAY1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CUZ5 | 0.0 | M4CUZ5_BRARP; Uncharacterized protein | ||||
STRING | Bra008040.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11747 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 0.0 | AP2 family protein |
Publications ? help Back to Top | |||
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