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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC2577_p3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 479aa MW: 55176.4 Da PI: 5.2259 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC2577_p3 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 176.1 | 1e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97
lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v ++
RrC2577_p3 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKaLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSW-RD 102
79****************************.99***************6335667999*************************************9.88 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128
+++g+kktLv+y+grap+g +t Wvmheyrl
RrC2577_p3 103 RAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
99***************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0090602 | Biological Process | sieve element enucleation |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKALLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETQCEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YVHGMSNVSG 180 NSSFDACSDL EISSTTHQVQ NAFQPRFGNG RFNSNTMISN EDWSQYYGSS YAPFPTPYKV 240 NNEIECSMLQ HNMSLPPLRV ENSAVSNCDF FTSMTHNNNH GVLEDFSFAA SGSNHYNSVG 300 DQVIHIGNYD EPPLMMSNHN MNQGYMEEQK IISSLDNNDQ DLGFQGDNTN DNINIDDFFS 360 FDVYNEDNVN QVEGKEEDVI TNETLDSSGF EVVEEEIRFN NQMLISTYQT TKILYHQVVP 420 SHTLKVHINP INHNVEERTL FIEEDNDSWL QRAEKITKTK LTLVGVMAQQ CYKYLAVFF
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-55 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |