PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2535_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 386aa    MW: 42391.3 Da    PI: 6.5905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2535_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.8e-12310355655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L++l+P+     ++  + a++L +Av+YIk+Lq
  RrC2535_p1 310 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 355
                 689*********************7....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.05E-12308359No hitNo description
SuperFamilySSF474591.44E-15309378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17309375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MESEFQQHHF LLHDHQHQRP PRTSGLARYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL  60
SGFLQTTDTS NTVDSFLHHT FSETDEKKPP EVKTEETTEV DDIPATVAMD VVEIPAAPGS  120
SGYASVVRSL GQNNKRPRER DDRTPPANNL ARHNSSPAGL FSSIDVETAY AAVMKNMGGF  180
GGGGNVMMNT EASSLTRGTK LPPPSMGTIP EIDDVKPVFS SRLPPRTLSG GFNRSFGNEG  240
SASSKLIART QSGGLDQYKT KDEDSSASRR PPLAHHMSLP KSLSDIEQLL SDSIPCKIRA  300
KRGCATHPRS IAERVRRTKI SERMRKLQDL VPNMDTQTNT ADMLDLAVQY IKDLQEQVKR  360
AGQDVDALVL ETRSWSMSAC QAGICA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470783.10.0PREDICTED: transcription factor bHLH122 isoform X1
SwissprotQ9C6900.0BH122_ARATH; Transcription factor bHLH122
TrEMBLA0A3N6QPG50.0A0A3N6QPG5_BRACR; Uncharacterized protein
STRINGBo6g024810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-171bHLH family protein
Publications ? help Back to Top
  1. Yang Z, et al.
    Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.
    Mol. Cell Proteomics, 2013. 12(12): p. 3559-82
    [PMID:24043427]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K
    Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation.
    Plant J., 2016. 87(6): p. 559-67
    [PMID:27227462]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Takahashi Y,Ebisu Y,Shimazaki KI
    Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors.
    Plant Physiol., 2017. 174(2): p. 815-822
    [PMID:28438792]