PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 306aa MW: 34255.6 Da PI: 7.8569

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2529_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	40	84	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E+e++v+a k++G W++I +++g ++t+ q++s+ qk+ RrC2529_p2 40 REKWTEAEHEKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 84 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-16	34	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.705	35	89	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.6E-16	38	87	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-12	39	87	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-9	40	80	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-13	40	83	IPR001005	SANT/Myb domain
CDD	cd00167	2.73E-9	42	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0009845	Biological Process	seed germination
GO:0009909	Biological Process	regulation of flower development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAMQEHCESL CDRASDELII SSTDAFCLKT RKPYTITKQR EKWTEAEHEK FVEALKLYGR 60 AWRRIEEHVG TKTAVQIRSH AQKFFTKVAR DCGVTSEKSI EIPPPRPKRK PMHPYPRKLV 120 IPDAKEMAYA ALTGGKLVPD EDNRSPTSVL SAHDSDGLGS IGSNSPNSSS ADYQVHELSS 180 HTEESLSPEA ETKQQSLKLF GKTFVVGDYN SWTSSIDSED VKKKSDLETQ SVRCSSSSSC 240 SENAETELTT QVVVVLSEEF KRSEGSAFSQ LKSSAIGMKN MKGFMPYKKR IKVEENSLVK 300 TSYPLW

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:23371945}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269\|PubMed:17587236, ECO:0000269\|PubMed:19805390}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442666.1	0.0	PREDICTED: protein REVEILLE 2
Swissprot	F4K5X6	1e-156	RVE2_ARATH; Protein REVEILLE 2
TrEMBL	A0A078HLV3	0.0	A0A078HLV3_BRANA; BnaA05g12950D protein
TrEMBL	A0A397ZBD3	0.0	A0A397ZBD3_BRACM; Uncharacterized protein
STRING	Bo6g057640.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14432	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	1e-121	MYB_related family protein

Publications ? help Back to Top
Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V A weed reaches new heights down under Plant Cell, 1999. 11(10): p. 1817-26 [PMID:10521514] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]