PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC25238_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 119aa MW: 13896.1 Da PI: 10.7973

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC25238_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	47	102	1	47
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 r+ WT+eE+ l+ +v+++ + W++I ++ + ++Rt+ ++k++w++ RrC25238_p2 47 RLLWTPEEEYMLKVGVEKFAAEakknmPWRKILEMGQkvfhETRTPTDLKDKWRNM 102 677****************9*******9999***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.41	42	103	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	9.5E-10	43	108	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-10	45	104	IPR009057	Homeodomain-like
Pfam	PF00249	8.5E-7	49	102	IPR001005	SANT/Myb domain
CDD	cd11660	4.55E-10	50	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MTSLALVVTS PPGRMMNQQR EDSRTAKVDN SKTVRDIPIF KMEHKRRLLW TPEEEYMLKV 60 GVEKFAAEAK KNMPWRKILE MGQKVFHETR TPTDLKDKWR NMTGARQKNK QDSTSVSGM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189305	8e-63	AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454377.1	2e-75	PREDICTED: uncharacterized protein LOC108825563
TrEMBL	M4F525	2e-70	M4F525_BRARP; Uncharacterized protein
STRING	Bra036179.1-P	3e-71	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7660	13	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	2e-07	telomere repeat binding factor 3