PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25175_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 401aa    MW: 46036 Da    PI: 5.4362
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25175_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.55.2e-22203260155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                  kpr+ Wt+ L e+F+ea++  GG++kA Pk +l++   m++kgLt+++v SHLQkYRl
  RrC25175_p1 203 KPRMLWTSYLQEKFLEAINIVGGPKKASPKVLLKCledMNIKGLTRNNVSSHLQKYRL 260
                  79****************************887654449******************8 PP
2Response_reg49.42.5e-1779320106
                   HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS
  Response_reg  20 kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpee 106
                      y +v++ +d+eea++ l +++  +++++ D  mpg++Gl++l+ i ++  +lp++++++ ++ e + +a+  Ga  +++Kp+ +e 
   RrC25175_p1   7 CCSY-QVTAYADAEEAIAFLTNSKheINIVIWDYHMPGINGLQALTIIGSKM-DLPVVIMSDDDKTESVMDAMVHGACHYVMKPVRKEI 93 
                   5568.999************776667**********************6654.8******************************87664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.7E-261153No hitNo description
PROSITE profilePS5011030.0251102IPR001789Signal transduction response regulator, receiver domain
SMARTSM004480.0088197IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521728.82E-222109IPR011006CheY-like superfamily
PfamPF000721.1E-13295IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.58E-131097No hitNo description
SuperFamilySSF466899.68E-12201263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-20202264IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-18203260IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MKEIMECCSY QVTAYADAEE AIAFLTNSKH EINIVIWDYH MPGINGLQAL TIIGSKMDLP  60
VVIMSDDDKT ESVMDAMVHG ACHYVMKPVR KEIIATMWQH IVRKRMISKP GLVPPVVAHD  120
DCSKQEKDVS VTVDQDDSEQ NIDKIEEKAT KKQRRTCIEE NQPMQSDLVK SNGSDQESDD  180
SRSISNYNCE QSINKEETRY FKKPRMLWTS YLQEKFLEAI NIVGGPKKAS PKVLLKCLED  240
MNIKGLTRNN VSSHLQKYRL SLEQNQIPQQ LPETDWSSLC RPLPSVGMNN GFIAPSSLMN  300
GPAVYPVQEN QYQNGYLAMN NNHFVTNNIP GLPYFNNEHH LQQQHQQRQY QLPNQVNYMM  360
RRNEPQQAYN GISLTDLESS IYTSLPNDPN EFLFDDYNFI N
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448795.10.0PREDICTED: putative two-component response regulator ARR19
SwissprotQ9M9B91e-111ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLA0A0D2ZQB70.0A0A0D2ZQB7_BRAOL; Uncharacterized protein
STRINGBo00641s030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.19e-59response regulator 19