PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2513_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 313aa MW: 34865.5 Da PI: 6.2446

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2513_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.1	9.9e-16	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ s+K + a+i+ A+++Ik+L+ RrC2513_p1 85 QRITHIAVERNRRRQMNQHLSVLRSLMPQP---FSQKGDQASIVGGAIDFIKELE 136 799*************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.58E-12	83	133	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-13	83	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-16	83	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.777	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-13	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-11	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MTLEALSSNG LLNFLLSESL SPTPFKSLLD LEPSPENDII IAKNTIPEMS PQEPASRQPP 60 PASRGKKRRR RKPRVCKNEE EAENQRITHI AVERNRRRQM NQHLSVLRSL MPQPFSQKGD 120 QASIVGGAID FIKELEHELL SLEAQKLQKD KLNQTVTSST SQDSNCEPEN PHPSLSQFFL 180 HSYDPSQENR NGSTSSVKTA MEDLEVTLIE THANIRILSR RRGFQWTSVV ATTGPPQLSK 240 LVAALQSLSL SVLHLSVTTL ETFAIYSIST KVEESCQLSS VDDIAGAVHH MLSIIEEEPF 300 CCSTMPELPF TSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	71	KKRRRRK
2	65	72	KKRRRRKP
3	66	71	KRRRRK
4	67	73	RRRRKPR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353555	0.0	AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480341.1	0.0	PREDICTED: transcription factor bHLH71
Swissprot	Q56XR0	1e-168	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A078JEC0	0.0	A0A078JEC0_BRANA; BnaA06g40430D protein
TrEMBL	A0A397Z8A1	0.0	A0A397Z8A1_BRACM; Uncharacterized protein
STRING	Bo7g075600.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10389	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	1e-143	beta HLH protein 71

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]