 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC2512_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 275aa MW: 31596.5 Da PI: 5.4353 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC2512_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.3 | 2.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd lv ++ ++G g+W++ +++ g+ R++k+c++rw++yl
RrC2512_p1 14 KGEWTAEEDRMLVAYISEYGLGDWRAMPKRAGLQRCGKSCRLRWLNYL 61
799*******************************************97 PP
|
| 2 | Myb_DNA-binding | 57.3 | 3.6e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T++E+e +++++ lG++ W++Ia+ m+ +Rt++++k++w++
RrC2512_p1 67 RGKFTPQEEEDIIKLHSVLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
89********************.*********.***********975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MGRTTWFDED GLKKGEWTAE EDRMLVAYIS EYGLGDWRAM PKRAGLQRCG KSCRLRWLNY 60
LRPGIKRGKF TPQEEEDIIK LHSVLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRRG 120
IDPMTHEPVV KATSSSTMLS PTLTPSSCSS SFSSTSSARL LNRLAAGISS RKHGLDRIKN 180
VILSEPRQAV EENKLMISSK EDEEEEVNGC FMEIDDNLIS TTSLDELLCE PYDLYQSDFY 240
HETGHYDLYQ SDFYHETDDQ LELFLEIHSF GQDLS
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF738285 | 0.0 | KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds. |
