PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2491_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 237aa    MW: 26102.8 Da    PI: 5.4955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2491_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-184090155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  RrC2491_p2 40 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90
                59*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-174099No hitNo description
Gene3DG3DSA:3.30.730.103.4E-304199IPR001471AP2/ERF domain
PROSITE profilePS5103221.6414198IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-194199IPR016177DNA-binding domain
PfamPF008471.6E-114190IPR001471AP2/ERF domain
SMARTSM003803.2E-3441104IPR001471AP2/ERF domain
PRINTSPR003675.6E-94253IPR001471AP2/ERF domain
PRINTSPR003675.6E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVKQERKIQV TTSSSSLSQS SSSTSSSLAL HHQSCKDKIK KYKGVRMRSW GSWVSEIRAP  60
NQKTRIWLGS YSTAEAAARA YDAALLCLKG PKANFNFPHI NTTSQFLIDI DEKTPLSPKS  120
IQKIAAQAAS SISSDAFTPL SSSNDDDHDD GIQNHPSPSS SSAASSPPGD HHNDDDLVSL  180
MASFVDEHVT LMDPSWYDHN EMFFINGAFD YSPQLISSKT TMDDLYDDAD IQLWSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1441991473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00246DAPTransfer from AT1G77640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893700.0AC189370.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455741.11e-174PREDICTED: ethylene-responsive transcription factor ERF013
SwissprotQ9CAP47e-85ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLA0A397YZ431e-118A0A397YZ43_BRACM; Uncharacterized protein
STRINGBra015660.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.14e-68ERF family protein