PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24910_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 323aa    MW: 36064.2 Da    PI: 7.9773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24910_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08252272526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd+C +aHg
  RrC24910_p1 252 PCPEFRK-GSCPKGDSCEYAHG 272
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-1128154IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.4E-1228172IPR020683Ankyrin repeat-containing domain
SMARTSM002487.671102IPR002110Ankyrin repeat
PROSITE profilePS5029712.96571154IPR020683Ankyrin repeat-containing domain
PfamPF136371.2E-673126No hitNo description
CDDcd002044.72E-1175171No hitNo description
SMARTSM0024816108140IPR002110Ankyrin repeat
PROSITE profilePS5010313.976247274IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5247273IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-6252272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6252273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MCGSERNLCS SRTVRAKLEE GIDATMSLLE YAACDDLSSF KRQTEENSVV DINEPGLWYC  60
KRVGSKKIGF QERKPLMVAA MYGSIQVLSY IISTGRRSHV NRVSSDDEKV TALHCAVSGC  120
SVSIVQVIKI LLDASASPNC LDANGNKPVD LLVRASRFIP NQTRKAVEFL LTGISLEEEE  180
VVKSVVTKYP ADASLPDINE GVYVTDEFRM FSFKVKPCSR AYSHDWTECP FVHPGENARR  240
RDPRKYPYTC VPCPEFRKGS CPKGDSCEYA HGVFESWLHP AQYRTRLCKD ETCCARKVCF  300
SAHRRDELKA VNASTGSTMV SLP
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621926.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
RefseqXP_013640482.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_013716870.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_022554838.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_022566463.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0D3B6000.0A0A0D3B600_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AJK60.0A0A3P6AJK6_BRAOL; Uncharacterized protein
STRINGBo3g034750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein