PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24875_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 193aa    MW: 22482.1 Da    PI: 7.0966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24875_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09154183130
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                  +r +h ++Er+RR ++N  ++ Lr+llP++
  RrC24875_p1 154 QRINHTAAERNRRLQMNGHINALRSLLPPS 183
                  699*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.65E-8145184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.42E-6152187No hitNo description
Gene3DG3DSA:4.10.280.102.4E-7152185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.064153193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6154183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTPSFLQFLD RKTDARSLEV QGFAEAQSFA FKEEEEEESM QDTVPFQQIL QSEEPSFLRL  60
LSLQNLKETW EIERFLSHEG YPHFYQNQVS ASSMEGTKQA LSSQEADVIL LPSSSSPTQH  120
KRKNRDLLAP DMTREKRKRR KTRPSQNSEE MENQRINHTA AERNRRLQMN GHINALRSLL  180
PPSYIQRVIS TTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120140KRKNRDLLAPDMTREKRKRRK
2135140KRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480977.11e-103PREDICTED: transcription factor bHLH67-like
SwissprotQ700E49e-55BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A078J1M27e-87A0A078J1M2_BRANA; BnaCnng29550D protein
STRINGBo4g099050.11e-58(Brassica oleracea)
STRINGXP_006402426.16e-59(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.12e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]