 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC2484_p5 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 343aa MW: 38344.4 Da PI: 9.5068 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC2484_p5 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 388.6 | 9.3e-119 | 1 | 343 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92
mdd g+r+ r+k+ + + ++ +s+ +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l al+++ens++
RrC2484_p5 1 MDDGGHRDngRHKApQGQwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDSALSALQYRENSMS 94
999999888888873211222222444.....5****************************************************************99 PP
GAGA_bind 93 ..........salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkkseks 174
a+p+g+q+ +g+k+i++ q++++ q++d+a++ re+e + ++ + +a e++k+k+++r k+pk+++++ +++k+++k+
RrC2484_p5 95 tttpavsnmaAACPPGCQMPRGVKHIHHPQMHHQqqhhmLQVSDHAYDeSREME---PNDVSPPPGTALESAKPKRGKRVKDPKATTKStAANKRGPKN 190
9******99999****************99976667767788888888555555...55666699*******************976554899999999 PP
GAGA_bind 175 kkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
+kvkke++d+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG lrqCYkWGnGGWqS+CCtttiS+yPLP+ +
RrC2484_p5 191 PRKVKKENEDDLtkimfvktsldygeeetsklvltgSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGDLRQCYKWGNGGWQSSCCTTTISMYPLPALP 289
9***9999883358********************************88*************************************************** PP
GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
RrC2484_p5 290 NKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 343
****************************88***********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MDDGGHRDNG RHKAPQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE RKSAVAERDM 60
AFLQRDTAIA ERNNAIMERD SALSALQYRE NSMSTTTPAV SNMAAACPPG CQMPRGVKHI 120
HHPQMHHQQQ HHMLQVSDHA YDESREMEPN DVSPPPGTAL ESAKPKRGKR VKDPKATTKS 180
TAANKRGPKN PRKVKKENED DLTKIMFVKT SLDYGEEETS KLVLTGSKSD WKSQEMVGLN 240
QVVYDETTMP PPVCSCTGDL RQCYKWGNGG WQSSCCTTTI SMYPLPALPN KRHARVGGRK 300
MSGSAFNKLL SRLAAEGHHD LSNPVDLKDH WAKHGTNRYI TIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EF529514 | 0.0 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
