PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC24831_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 63aa MW: 7093 Da PI: 4.3905

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC24831_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	40.7	7.5e-13	10	43	1	36
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevike 36 lppGfrFhP+deelv++yL++k+++k+l+++ +++ RrC24831_p1 10 LPPGFRFHPSDEELVCHYLCNKIRAKSLHCN--VED 43 79*************************7762..222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-12	8	42	IPR003441	NAC domain
PROSITE profile	PS51005	13.421	10	63	IPR003441	NAC domain
Pfam	PF02365	3.5E-8	11	35	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MGLKDIGSTL PPGFRFHPSD EELVCHYLCN KIRAKSLHCN VEDDDVDEAL KDATDLVEID 60 LHI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738274	4e-63	KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603495.1	1e-37	PREDICTED: NAC domain-containing protein 21/22-like
Refseq	XP_018464184.1	1e-37	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X2
TrEMBL	A0A0D3DNB8	2e-36	A0A0D3DNB8_BRAOL; Uncharacterized protein
STRING	Bo8g054390.1	4e-37	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27412	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	5e-28	NAC domain containing protein 74