PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2480_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 677aa    MW: 75509.5 Da    PI: 5.0217
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2480_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.5e-33231152102
                   HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k ye+++d++++++isws+ng nsfv++d++ f++++LpkyFkhsn++SF+RQLn+YgF+kv+ ++         weF+++ F +g+kell+++
    RrC2480_p5  23 FLRKCYEMVDDSSTDSIISWSSNGdNSFVISDTTLFSTHLLPKYFKHSNLSSFIRQLNIYGFRKVDADR---------WEFANDGFVRGQKELLKNV 110
                   9********************77769****************************************999.........******************* PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                    r+k+
    RrC2480_p5 111 VRRKN 115
                   **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3414108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5619113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-3219113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-2923113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:3.40.50.3002.6E-68439671IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.91E-60441664IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd032603.63E-95443661No hitNo description
PROSITE profilePS5089325.03443674IPR003439ABC transporter-like
PfamPF000052.4E-30459602IPR003439ABC transporter-like
SMARTSM003821.2E-13468651IPR003593AAA+ ATPase domain
PROSITE patternPS002110574588IPR017871ABC transporter, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0015786Biological ProcessUDP-glucose transport
GO:0005634Cellular Componentnucleus
GO:0012506Cellular Componentvesicle membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005460Molecular FunctionUDP-glucose transmembrane transporter activity
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MVKSSSDRVD SSSSSPSPSV APFLRKCYEM VDDSSTDSII SWSSNGDNSF VISDTTLFST  60
HLLPKYFKHS NLSSFIRQLN IYGFRKVDAD RWEFANDGFV RGQKELLKNV VRRKNVQSST  120
SSEQHQRKTS TADADTSCQE KECSGESELW KEVDILKGDK KALAQELVKV RQYQESTDAK  180
MLHLEDRVQG MEESQQEMLS FLVMVMQNPS LLVQLLQPKE NSWRKTEGGG GATILEEVTD  240
EGETTNSKGL LPLVTYHQKA PSEGTTAKSS SNEVNDFLRN ADMLKFCLDE NRVPLIIPDL  300
YDDGAWEKLL LLSPSKKKKN VQEKNDVTLE EEDEDGGRME LDKSLALELI EEEMEKADDF  360
DFDIEQLTPE RSRNLEILTQ HMRLLASDQQ PFSYTAQSSK LKHTKKKKTT QKTMPSLLSG  420
ESNGALREHL LDVEALSGQE PKIRVRDLTR VSDDGSLILK GVSMDIPKGM IVGVIGPSGS  480
GKSTFLRSLN RLWEPPATTV FLDGVDIASI DVIALRRRVG MLFQLPVLFE GTVADNVRYG  540
PNLRGHKLSD QDVYKLLSLA DLDASFAKKT GSELSVGQAQ RVALARTLAN DPEVLLLDEP  600
TSALDPISTE NVEDVIVKLK KQRGITTVIV SHSIKQIQRV ADIVCLVVDG EIVEVLKPDE  660
LSQATHPMAR RFLQLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yms_A5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4yms_J5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4ymt_A5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4ymt_J5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4ymu_A5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4ymu_J5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4ymv_A5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4ymv_J5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4ymw_A5e-3645567312236ABC-type polar amino acid transport system, ATPase component
4ymw_J5e-3645567312236ABC-type polar amino acid transport system, ATPase component
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324490.0AC232449.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446227.10.0PREDICTED: heat stress transcription factor A-8-like
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0D3CYU40.0A0A0D3CYU4_BRAOL; Uncharacterized protein
TrEMBLA0A3N6Q4Y30.0A0A3N6Q4Y3_BRACR; Uncharacterized protein
TrEMBLA0A3P6FZ890.0A0A3P6FZ89_BRAOL; Uncharacterized protein
STRINGBo6g106450.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-166heat shock transcription factor A8