PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC247_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 290aa    MW: 32107.3 Da    PI: 7.7142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC247_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++k+   g+W+t ++  g+ R++k+c++rw +yl
        RrC247_p7 14 KGPWTPEEDEILVEYIKKNSHGSWRTLPKNAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.11.5e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l v++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
        RrC247_p7  67 RGPFTPDEEKLVVQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.599961IPR017930Myb domain
SuperFamilySSF466897.49E-3011108IPR009057Homeodomain-like
SMARTSM007173.9E-131363IPR001005SANT/Myb domain
PfamPF002498.1E-151461IPR001005SANT/Myb domain
CDDcd001671.83E-101661No hitNo description
PROSITE profilePS5129425.51262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2665116IPR009057Homeodomain-like
SMARTSM007178.2E-1566114IPR001005SANT/Myb domain
PfamPF002492.2E-1567112IPR001005SANT/Myb domain
CDDcd001671.80E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTPE EDEILVEYIK KNSHGSWRTL PKNAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPDEEKLVVQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRLLSMG  120
LDPKTHEPLP SHGLAIQAPA SPTTRHMAQW ESARLEAEAR LSRESMLFNP SSLGGGKTDC  180
DHFLRIWNSE IGDSFRNLAP FDETTATTCQ SPCSRTTTSS SSAALPKSST NSCVGKEIVM  240
KTTPGSDSSP CSNNLEDVSS DSALQLLLDF PISDDDMSFL EENIGSYSKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491593.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_018491594.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_018491665.10.0PREDICTED: transcription repressor MYB6-like
RefseqXP_018491666.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ9M2D91e-173MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0D3DUS70.0A0A0D3DUS7_BRAOL; Uncharacterized protein
STRINGBo8g095790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-161myb domain protein 17