PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC24680_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 174aa MW: 19482.5 Da PI: 10.2807 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.7 | 0.00024 | 4 | 20 | 1 | 17 |
CHHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriN 17 +r++h ++Er+RR+++N RrC24680_p1 4 QRMTHIAVERNRRRQMN 20 79**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-7 | 3 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
METQRMTHIA VERNRRRQMN GDQASIVGGA IDFLKILEQH LQSLEAQKMT QQTSKLRIDA 60 TVVERHVNLK IQCCQRKQGQ LLRSIILLEK RGFTVLHLSI TSPCSTSVSY SFNLKPQDRL 120 YVGHVSTILI GKPKTSGRKI ARNVLTKATE VEASATAESD TTELPEIVKT AQEA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 4 | 15 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB678434 | 5e-34 | AB678434.1 Arabidopsis thaliana mRNA for basic helix-loop-helix DNA-binding superfamily protein, complete cds. | |||
GenBank | AC005310 | 5e-34 | AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence. | |||
GenBank | AF488602 | 5e-34 | AF488602.1 Arabidopsis thaliana clone bHLH070 putative bHLH transcription factor mRNA, partial sequence. | |||
GenBank | CP002685 | 5e-34 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478268.1 | 5e-68 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH70-like | ||||
Refseq | XP_018478290.1 | 5e-68 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH70-like | ||||
Refseq | XP_018483142.1 | 5e-68 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH70-like | ||||
Swissprot | O81037 | 1e-52 | BH070_ARATH; Transcription factor bHLH70 | ||||
TrEMBL | A0A397ZWE7 | 3e-61 | A0A397ZWE7_BRACM; Uncharacterized protein | ||||
STRING | Bo4g197360.1 | 1e-61 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 2e-54 | bHLH family protein |
Publications ? help Back to Top | |||
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