PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2414_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 307aa    MW: 33523.2 Da    PI: 7.5025
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2414_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP46.87.6e-151181474978
                 EEETTT--SS--S-STTTT-------S--- CS
         SBP  49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 fh+l+efDeek+sCr+rL++hn+rrrk+q+
  RrC2414_p1 118 FHALEEFDEEKKSCRKRLDGHNRRRRKPQP 147
                 ***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.10966145IPR004333Transcription factor, SBP-box
PfamPF031101.1E-7118144IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.51E-11118150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDWNFKPSSG YFSEFDQESV PYITPVDASI SFGGSSSPPK GDFSFDLKLG RNMGHSSAFG  60
NTEQVISLGK LKESAPEASR SSSGSSKRTR GNNQIPWCIN RGFVNNAAGF MLWKSLMFHA  120
LEEFDEEKKS CRKRLDGHNR RRRKPQPDNI GRSATFFQGS KLLDFSSSPH VFPTTKSVVS  180
PSWGNGLVSV AMANGSSYGQ NQSYAGSCPA KTGITFPISS SPNNRGKQFP FLQEEEDCSR  240
MTSCIHDSDC ALSLLSSSSS HLLQPPLSLS QETVFYGFGL FENASAVSDG SGNEAVALPQ  300
TFPFHWE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127144KKSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473041.11e-173PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018473042.11e-173PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotB9DI201e-121SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI111e-121SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A397ZV411e-146A0A397ZV41_BRACM; Uncharacterized protein
STRINGBra022766.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-111SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]