PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2377_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 758aa    MW: 84923.2 Da    PI: 6.8484
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2377_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-101858948
                     HHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  9 dellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     de+l++av+ + g++Wk+I +    k Rt+ qc +rwqk+l
       RrC2377_p4 18 DEILKKAVHNFKGKNWKKIGKSEYfKDRTDVQCLHRWQKVL 58
                     9******************9998899************986 PP
2Myb_DNA-binding63.34.9e-2064110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ +v++++++G++ W+tIar+++ gR +kqc++rw+++l
       RrC2377_p4  64 KGPWTKEEDDMIVQLIQKYGPKKWSTIARYLP-GRIGKQCRERWHNHL 110
                      79******************************.*************97 PP
3Myb_DNA-binding42.41.6e-13116158145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
       RrC2377_p4 116 KEAWTQEEELVLIRAHQVYGNR-WAELTKFLP-GRSDNGIKNHWH 158
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.034158IPR017930Myb domain
SMARTSM007170.28960IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-191769IPR009057Homeodomain-like
SuperFamilySSF466894.45E-111773IPR009057Homeodomain-like
CDDcd001673.50E-71858No hitNo description
PfamPF002494.2E-71858IPR001005SANT/Myb domain
PROSITE profilePS5129432.27459114IPR017930Myb domain
SuperFamilySSF466892.35E-3161157IPR009057Homeodomain-like
SMARTSM007174.9E-1963112IPR001005SANT/Myb domain
PfamPF002493.6E-1864110IPR001005SANT/Myb domain
CDDcd001671.58E-1666110No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2770114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-19115165IPR009057Homeodomain-like
PROSITE profilePS5129417.977115165IPR017930Myb domain
SMARTSM007174.0E-12115163IPR001005SANT/Myb domain
PfamPF002491.3E-11116158IPR001005SANT/Myb domain
CDDcd001672.15E-9118158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
IQNKCAFLHP LIIHILQDEI LKKAVHNFKG KNWKKIGKSE YFKDRTDVQC LHRWQKVLNP  60
ELVKGPWTKE EDDMIVQLIQ KYGPKKWSTI ARYLPGRIGK QCRERWHNHL NPAINKEAWT  120
QEEELVLIRA HQVYGNRWAE LTKFLPGRSD NGIKNHWHSS VKKKLDSYMS SGLLDQYQAM  180
PLAPFERSST LQSAFMQSTI DELPMPYTKE SKETSLGASN STSNIDVATT TYTNSENISS  240
SETECCRILF LDQESEGLSV DQADYQDPVF SASASDSQIS EATKSPMQSS SSKSITTSAS  300
GKGTLRPAPL IISPDKYSKK SSGLICHHFE AGPNSRTDDR GGFITSANEG PNNSSEECQS  360
YHLNDSKKLV PVNDFASLAE VKPHSLLKQE PNTAVEQHHE DMGASSSLCF PSLDLPVFSS  420
DLLQSKNDPL HDYSPLGIRK LLMSTMTCIS PIRLWESPTG KKTLVGAKSI LRKRTRDLLT  480
PLSEKRSDKK LEIDIAASLA TDFSRLDVMF DESESRESKS LEKTEQTCLD ANVKEKEVEN  540
GQSLSGVLSE NNNTNKQVLS PSSQSVTKAE KGQVSTPRNN MQRTLMATSN KEQHSSASLC  600
LVINSPSRGR NTEGHLVDNE TSNQSFSIFC GTPFKRGLES PSAWKSPFYV NSLLHSPRFD  660
TDITIEDMDY IFSPVERSYG SRGLMTQRTE HTSAFAAFDA MEVSLSASNY DDARKMKEFD  720
KENNDPLLTE RRVLDFNDCE SPTKVTEAPS SYLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-641716513159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-641716513159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269|PubMed:20018666}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324500.0AC232450.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491937.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_018491938.10.0PREDICTED: myb-related protein 3R-1-like
SwissprotQ94FL90.0MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBLA0A0D3B0M30.0A0A0D3B0M3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6A9520.0A0A3P6A952_BRAOL; Uncharacterized protein
STRINGBo3g007070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132131828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-140myb domain protein 3r-4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Saito T, et al.
    Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.
    Plant Signal Behav, 2015. 10(3): p. e990817
    [PMID:25806785]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]