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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC23716_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 200aa MW: 22803.7 Da PI: 9.8225 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.3 | 3.8e-15 | 28 | 79 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P++ ++++ + a+i+ A++Y+k+L+ RrC23716_p1 28 QRMTHIAVERNRRKQMNEYLGVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 79 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.5E-14 | 26 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.60E-12 | 26 | 83 | No hit | No description |
PROSITE profile | PS50888 | 15.948 | 27 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-17 | 27 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-12 | 28 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-9 | 33 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MENHSPIQPR RKRRRTRSNK NKEEIESQRM THIAVERNRR KQMNEYLGVL RSLMPSSYAQ 60 RGDQASIVGG AINYVKELEH ILQSMEPRRT TTTTHEADTS TNSLMSPFSE FFTYPQYSTK 120 SSSSATENSS SPTEIEVTVA EGHANIKIMT KRKPRQLLQL VDSIQSLGLT LLHLNVTTLD 180 NSILYSISVK LINHEILESD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 14 | RKRRR |
2 | 10 | 15 | RKRRRT |
3 | 28 | 39 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489453.1 | 1e-117 | PREDICTED: transcription factor bHLH94 | ||||
Swissprot | Q9SK91 | 2e-92 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | A0A0D3CCF4 | 1e-107 | A0A0D3CCF4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6RIL2 | 1e-107 | A0A3N6RIL2_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6EFZ5 | 1e-107 | A0A3P6EFZ5_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4FIC7 | 1e-107 | M4FIC7_BRARP; Uncharacterized protein | ||||
STRING | Bra040856.1-P | 1e-108 | (Brassica rapa) | ||||
STRING | Bo5g038570.1 | 1e-108 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 4e-84 | bHLH family protein |
Publications ? help Back to Top | |||
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