PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2365_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 702aa    MW: 76753.9 Da    PI: 7.0982
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2365_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1992147156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  RrC2365_p2  92 KKRYHRHTAKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 147
                 688999***********************************************999 PP
2START140.41.8e-4429143965206
                 HCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS
       START  65 llddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152
                  ++  e+W e+++    + +t+e issg      gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + ss++ R   lpSg+
  RrC2365_p2 291 AMEELERWAEMFPsmisRTSTTEIISSGmggtrnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSGCRR---LPSGC 385
                 5667779******9999*****************************************************************98.677666...***** PP

                 EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                 l+++++ng+skvtw+eh++++++ +h l+r+l++ gla+ga++w+a+lqrqce+
  RrC2365_p2 386 LVQDMANGYSKVTWIEHTEYDENRIHRLYRPLLSCGLAFGAQRWMAALQRQCEC 439
                 ****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-2179149IPR009057Homeodomain-like
SuperFamilySSF466892.3E-1980149IPR009057Homeodomain-like
PROSITE profilePS5007117.21689149IPR001356Homeobox domain
SMARTSM003891.5E-1790153IPR001356Homeobox domain
CDDcd000866.09E-1792149No hitNo description
PfamPF000463.9E-1792147IPR001356Homeobox domain
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
SMARTSM002341.5E-24234439IPR002913START domain
PROSITE profilePS5084827.715284442IPR002913START domain
SuperFamilySSF559611.37E-21290439No hitNo description
PfamPF018525.1E-38292439IPR002913START domain
CDDcd088752.60E-76296438No hitNo description
SuperFamilySSF559611.79E-18468694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MNFNGYLGDG SSGDHFSFSA ASTMPHSRPF SSNGLSLGLQ TDGVNGGEAF ETNATRNRSR  60
GGEDGESRSE SDNAEAVSGD DLETGDKPPR KKKRYHRHTA KQIQDLESVF KECAHPDEKQ  120
RLDLSRRLNL DPRQVKFWFQ NRRTQMKTQI ERHENALLRQ ENDKLRAENM SVREAMRNPM  180
CSICGGAAVL GEVSMEEQHL RIENSRLKDE LDRVCALTGK FLGRSPTGSH HVPDSSLVLG  240
VGSGGGGFTL SSPSLPQASP RFEISNCTGL AKPPVSDFDQ RSRYLDLALA AMEELERWAE  300
MFPSMISRTS TTEIISSGMG GTRNGALHLM HAELQLLSPL VPVRQVSFLR FCKQHAEGVW  360
AVVDVSIDSI REGSSSGCRR LPSGCLVQDM ANGYSKVTWI EHTEYDENRI HRLYRPLLSC  420
GLAFGAQRWM AALQRQCECL TILMSSTVSP SRSPTPISCN GRKSMLKLAK RMTDNFCGGV  480
CASSLQKWSK LNVGNVDEDV RIMTRKSVND PGEPPGIVLN AATSVWMPVS PKRLFDFLGN  540
ERLRSEWDIL SNGGPMQEMA HIAKGHDHSN SVSLLRATAI NANQSSMLIL QETSIDAAGA  600
VVVYAPVDIP AMQAVMNGGD SAYVALLPSG FAILPNAPQR SEERNGNGGC MEEGGSLLTV  660
AFQILVNSLP TAKLTVESVE TVNNLISCTV QKIKAALHCD IT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1824900.0DQ182490.1 Brassica napus baby boom interacting protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482742.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J3D0Z20.0A0A1J3D0Z2_NOCCA; Homeobox-leucine zipper protein HDG1
STRINGA0A087GZL20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]