PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CPP

Protein Properties

Length: 681aa MW: 74846.4 Da PI: 6.2932

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2359_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.3	2.3e-16	392	430	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+N+ RrC2359_p2 392 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNRP 430 689**********************************75 PP
2	TCR	52.8	8e-17	477	516	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeCf++g+ Cs +C+Ce+CkN RrC2359_p2 477 RHKRGCNCKKSNCLKKYCECFQSGVGCSINCRCEGCKNAF 516 589***********************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.4E-19	391	432	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.515	392	517	IPR005172	CRC domain
Pfam	PF03638	5.7E-12	394	429	IPR005172	CRC domain
SMART	SM01114	5.7E-17	477	518	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.4E-12	479	515	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048444	Biological Process	floral organ morphogenesis
GO:0051302	Biological Process	regulation of cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MDSSQKKKKI ETPTPKSKFE DSPVFNFINN LSPIETVRSI PTVQTFNSLS FTSPPPVFTS 60 PHASFHRESR FFRCHNSVER SKALESLDST QEVVGGASGE VDLNKDATLE EEEEEEETSC 120 GHVDSPPGPG DIVTQVLLDP SGGAPRGEDN ASSSEDVRKI LDAQGENDTP GCGRLMADAA 180 ELLVFRSPND SEAFGCLVDI ISSSERRFCA GVKLTKQHDI TKDVPANDNE PLALVPNQSS 240 VLSLHRGSMR RRCLDFEVLG KRKKDIADDD KQTLGDNKAE SSSKCVVPGI GLHLNAIPMS 300 SKAIKINTRH EGSASVEIQK SFPGSITPVH SQDIMQETLV QAETEAGEGL AVEEETPQPL 360 VFEELNQDSL QKKKQVFFLE KRKVEEPGEG DSCKRCNCKK SKCLKLYCEC FAAGVYCIEP 420 CSCVDCFNRP IHEDTVLATR KQIESRNPLA FAPKVIRNSD SIMETSDDAS KTPASARHKR 480 GCNCKKSNCL KKYCECFQSG VGCSINCRCE GCKNAFGKKE AYLLAIMESK QEEDVSKIQQ 540 NSDLPKEVEQ NPSSDQPSTP LPPYRHMVVH QPFLSKNRLP PTQFFLGAGS SSFRKPDRDL 600 TQARIDKKPL ETVAEDKTEI MPEILSDTPI TTVKAISPNS KRVSPPHIGS SESGSILGKR 660 TNGRKLILRS IPAFPSLNPN Q

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MDSSQKKKKI ETPTPKSKFE DSPVFNFINN LSPIETVRSI PTVQTFNSLS FTSPPPVFTS  60
PHASFHRESR FFRCHNSVER SKALESLDST QEVVGGASGE VDLNKDATLE EEEEEEETSC  120
GHVDSPPGPG DIVTQVLLDP SGGAPRGEDN ASSSEDVRKI LDAQGENDTP GCGRLMADAA  180
ELLVFRSPND SEAFGCLVDI ISSSERRFCA GVKLTKQHDI TKDVPANDNE PLALVPNQSS  240
VLSLHRGSMR RRCLDFEVLG KRKKDIADDD KQTLGDNKAE SSSKCVVPGI GLHLNAIPMS  300
SKAIKINTRH EGSASVEIQK SFPGSITPVH SQDIMQETLV QAETEAGEGL AVEEETPQPL  360
VFEELNQDSL QKKKQVFFLE KRKVEEPGEG DSCKRCNCKK SKCLKLYCEC FAAGVYCIEP  420
CSCVDCFNRP IHEDTVLATR KQIESRNPLA FAPKVIRNSD SIMETSDDAS KTPASARHKR  480
GCNCKKSNCL KKYCECFQSG VGCSINCRCE GCKNAFGKKE AYLLAIMESK QEEDVSKIQQ  540
NSDLPKEVEQ NPSSDQPSTP LPPYRHMVVH QPFLSKNRLP PTQFFLGAGS SSFRKPDRDL  600
TQARIDKKPL ETVAEDKTEI MPEILSDTPI TTVKAISPNS KRVSPPHIGS SESGSILGKR  660
TNGRKLILRS IPAFPSLNPN Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	396	514	14	120	Protein lin-54 homolog
5fd3_B	2e-16	396	514	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	263	RRRCLDFEVLGKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00370	DAP	Transfer from AT3G22780	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018493471.1	0.0	PREDICTED: CRC domain-containing protein TSO1
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A078IU52	0.0	A0A078IU52_BRANA; BnaCnng27630D protein
TrEMBL	A0A0D3CH36	0.0	A0A0D3CH36_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EKS8	0.0	A0A3P6EKS8_BRAOL; Uncharacterized protein
STRING	Bo5g094500.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]