 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC2341_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C2H2 |
| Protein Properties |
Length: 224aa MW: 24477.1 Da PI: 5.6362 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC2341_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.5 | 5e-05 | 197 | 220 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
+ C+ C+++F++ + L++H + H
RrC2341_p1 197 FGCSSCNRTFNSEMGLQSHTKAkH 220
56*****************99877 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MEFWGVEVKG GEPLRVDPGK DMIVHISLAA LGEKKNGGNE PVQLYTKVED QKLLIGTLSH 60
DKFPQLCTEI VLPRSFELSH SWKDGSVFFT GYIEEKKVTV EADEDDDEDS SDDEEDESSD 120
EETPEKKVEE AKKRPAEANT SKTASNKKAK FVTPQKSESK KPHVHVATPH PSKGVKSSGS 180
NGETSKQQQT PKSAGAFGCS SCNRTFNSEM GLQSHTKAKH SAAA
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Involved in the modulation of abscisic acid and stress-responsive genes. {ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:16553900}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by abscisic acid. {ECO:0000269|PubMed:16553900}. |
| Publications
? help Back to Top |
- Song Y,Wu K,Dhaubhadel S,An L,Tian L
Arabidopsis DNA methyltransferase AtDNMT2 associates with histone deacetylase AtHD2s activity.
Biochem. Biophys. Res. Commun., 2010. 396(2): p. 187-92
[PMID:20331964] - Khan A, et al.
The Arabidopsis STRESS RESPONSE SUPPRESSOR DEAD-box RNA helicases are nucleolar- and chromocenter-localized proteins that undergo stress-mediated relocalization and are involved in epigenetic gene silencing.
Plant J., 2014. 79(1): p. 28-43
[PMID:24724701] - Han Z, et al.
AtHD2D Gene Plays a Role in Plant Growth, Development, and Response to Abiotic Stresses in Arabidopsis thaliana.
Front Plant Sci, 2016. 7: p. 310
[PMID:27066015] - Buszewicz D, et al.
HD2C histone deacetylase and a SWI/SNF chromatin remodelling complex interact and both are involved in mediating the heat stress response in Arabidopsis.
Plant Cell Environ., 2016. 39(10): p. 2108-22
[PMID:27083783] - Chen X, et al.
Canonical and Noncanonical Actions of Arabidopsis Histone Deacetylases in Ribosomal RNA Processing.
Plant Cell, 2018. 30(1): p. 134-152
[PMID:29343504] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615]
|
