PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23289_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 187aa    MW: 21483.4 Da    PI: 5.1101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23289_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.33e-101813111128
          NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLv 107
                  de ++ +yLk+ v++     +++ +++d+++ +P++       + +++ f + + +++a gk      + g W+   +dk ++++ +g+l g kk+L 
  RrC23289_p2  18 DELILLRYLKPMVDDGASWPQHFSEDADVFNKNPSNTF-----NPEDTVFVIVNPRTEACGKTDGC--DYGSWRIMARDKLIKNEeTGNLLGFKKILK 108
                  5556789******99996665778999********985.....34566777777777777655544..689***********99878889******** PP

          NAM 108 fy..kgrapkgektdWvmheyrl 128
                  f   k ++ +  k +Wvm+eyrl
  RrC23289_p2 109 FCvkKTTSAREYKRSWVMEEYRL 131
                  *965445566679********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.5068149IPR003441NAC domain
SuperFamilySSF1019412.75E-2018147IPR003441NAC domain
PfamPF023651.6E-718131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAADDYLQIR EELMGAGDEL ILLRYLKPMV DDGASWPQHF SEDADVFNKN PSNTFNPEDT  60
VFVIVNPRTE ACGKTDGCDY GSWRIMARDK LIKNEETGNL LGFKKILKFC VKKTTSAREY  120
KRSWVMEEYR LPSKWNPNQD HVICKVRLLF QTEIGFLLSK HFSYSSGPLP DTQSLPAYGY  180
GLPQEEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455755.11e-134PREDICTED: uncharacterized protein LOC108826911
RefseqXP_018467294.11e-133PREDICTED: uncharacterized protein LOC108838937
TrEMBLA0A0D3EBI91e-117A0A0D3EBI9_BRAOL; Uncharacterized protein
STRINGBo9g122180.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60340.11e-77NAC family protein